Bifrost bridge for simplified large-scale transfer of bioimage data using an OMERO server
Project description
OMERO-Bifrost
Bifrost bridge for large-scale transfer of bioimage data using an OMERO server. A simplified Python CLI tool and package to transfer image data/metadata from and to an OMERO server.
Requirements
- Python
3.8
- typer
0.9.0
- rich
13.5.2
- zeroc-ice
3.6.5
- omero-py
5.13.1
(downgraded from5.15.0
given ezomero2.1.0
requirements) - omero-upload
0.4.0
- ezomero
2.1.0
Install with PyPI
pip install omero-bifrost
Usage
Type omero-bifrost --help
to see the full range of commands and subcommands.
Development notes
To install packages in requirements.txt
in the current conda env.:
pip install -r requirements.txt
To test package, install using pip:
pip install -e .
Project details
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