OMERO user token management system
Project description
OMERO user token
Python package that creates long running user tokens for use with the OMERO API under non-interactive, headless conditions.
Requirements
- Python 3.6+
- OMERO.server 5.6
Usage
Creating a user token and making it active:
omero_user_token set
Please see omero_user_token set --help
for detailed information. The
default server hostname and port can be set in
${HOME}/.omero_user_token/config
using an INI file compatible style:
[server]
host = omero.example.com
port = 4064
Retrieving the current active token (validation will be performed):
omero_user_token get
Token format
The token format is as follows:
<omero_session_key>@<host>:<port>
Example usage
Bash:
token=$(omero_user_token get)
if [ $? -ne 0]; then
echo "No valid token found"
exit 1
fi
key=$(echo "${token}" | sed -e 's/^\(.*\)@.*:.*$/\1/')
host=$(echo "${token}" | sed -e 's/^.*@\(.*\):.*$/\1/')
port=$(echo "${token}" | sed -e 's/^.*@.*:\(.*\)$/\1/')
echo "Connecting to ${host}:${port} with key ${key}"
Python:
from omero_user_token import getter
token = getter()
if token is not None:
omero_session_key = token[:token.find('@')]
host, port = token[token.find('@') + 1:].split(':')
port = int(port)
key = token[:token.find('@')]
print(f"Connecting to {host}:{port} with key {key}")
License
OMERO user token is distributed under the terms of the GPL v2 license.
Please see LICENSE.txt
for further details.
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