Package for simple and consistent creation and parsing of OME metadata for B24 of Diamond Light Source Ltd.
Package to help simply and consistently create and parse OME metadata for B24 of Diamond Light Source Ltd. This is a modified copy of python_bioformats' omexml.py with a section from the Allen Institute for Cell Science's aicsimageio version of omexml.py (indicated within the file). This package extends capabilities, predominantly in terms of ROIs, while offering a light-weight distribution of the omexml file.
from oxdls import OMEXML
Current changes (compared to python-bioformats)
- TiffData - this allows IFDs to be defined (created using
set_tiffdata_count(value)) (from aicsimageio)
get_ExposureTime()functions have been added
- X, Y, Z units have been added for each plane
- Square ROIs (an roiref must be created for each ROI first, then ROIs are created using
set_roi_count(value), then for each ROI: ROI > Union > Rectangle, where ROI parameters can be set)
- Small formatting changes to improve consistency
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