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Package for simple and consistent creation and parsing of OME metadata for B24 of Diamond Light Source Ltd.

Project description

omexml-dls

Package to help simply and consistently create and parse OME metadata for B24 of Diamond Light Source Ltd. This is a modified copy of python_bioformats' omexml.py with a section from the Allen Institute for Cell Science's aicsimageio version of omexml.py (indicated within the file). This package extends capabilities, predominantly in terms of ROIs, while offering a light-weight distribution of the omexml file.

Recommended import:

from oxdls import OMEXML

Current changes (compared to python-bioformats)

  • TiffData - this allows IFDs to be defined (created using set_tiffdata_count(value)) (from aicsimageio)
  • set_ and get_ExposureTime() functions have been added
  • X, Y, Z units have been added for each plane
  • Square ROIs (an roiref must be created for each ROI first, then ROIs are created using set_roi_count(value), then for each ROI: ROI > Union > Rectangle, where ROI parameters can be set)
  • Small formatting changes to improve consistency

Project details


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Files for omexml-dls, version 1.0.3
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Filename, size omexml_dls-1.0.3-py3-none-any.whl (16.1 kB) File type Wheel Python version py3 Upload date Hashes View
Filename, size omexml-dls-1.0.3.tar.gz (14.8 kB) File type Source Python version None Upload date Hashes View

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