oncoprep-docker 0.1.0

A lightweight Docker wrapper for the OncoPrep neuro-oncology MRI preprocessing pipeline

oncoprep-docker

A lightweight Docker/Podman wrapper for the OncoPrep neuro-oncology MRI preprocessing pipeline.

This package provides the oncoprep-docker command, which transparently maps host paths into the container, handles GPU pass-through, TemplateFlow caching, and forwards all unknown flags directly to the containerised oncoprep entrypoint.

Installation

pip install oncoprep-docker

Requirements

• Python ≥ 3.9
• Docker or Podman installed and running

Usage

Run oncoprep-docker exactly as you would run oncoprep on a bare-metal installation:

oncoprep-docker /path/to/bids /path/to/output participant \
    --participant-label 001 --run-segmentation

For full usage information:

oncoprep-docker --help

License

Apache 2.0 — see LICENSE.