openmassspec-io (Python)
Python bindings for the openmassspec-io
Rust crate. Detect a Thermo / Bruker / Waters / Agilent / SCIEX acquisition on disk, convert
it to mzML, or stream spectra as zero-copy NumPy arrays / pyarrow record
batches.
import openmassspec_io as opio
fmt = opio.detect("sample.raw") # -> "thermo" | "bruker" | "waters" | None
opio.to_mzml("sample.raw", "sample.mzML", indexed=True)
for spec in opio.iter_spectra("sample.raw"):
print(spec.native_id, spec.ms_level, spec.mz.shape)
# Optional Arrow stream (requires pyarrow):
reader = opio.read_arrow("sample.raw", batch_size=1024)
for batch in reader:
print(batch.num_rows)
Build from source:
pip install maturin
maturin develop --release
1 maintainer
Metadata
1 maintainer
Release files for openmassspec-io 2.0.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| openmassspec_io-2.0.0.tar.gz | 50.1 kB | Details |
Built distributions (wheels)
| File | Reset | |||
|---|---|---|---|---|
| openmassspec_io-2.0.0-cp39-abi3-win_amd64.whl | CPython 3.9 | abi3 | Windows x86-64 | Details |
| openmassspec_io-2.0.0-cp39-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl | CPython 3.9 | abi3 | Linux glibc 2.17+ x86-64 | Details |
| openmassspec_io-2.0.0-cp39-abi3-manylinux_2_17_aarch64.manylinux2014_aarch64.whl | CPython 3.9 | abi3 | Linux glibc 2.17+ ARM64 | Details |
| openmassspec_io-2.0.0-cp39-abi3-macosx_11_0_arm64.whl | CPython 3.9 | abi3 | macOS 11.0+ ARM64 | Details |
| openmassspec_io-2.0.0-cp39-abi3-macosx_10_12_x86_64.whl | CPython 3.9 | abi3 | macOS 10.12+ x86-64 | Details |
Total release size: 12.7 MB
Release files / openmassspec_io-2.0.0.tar.gz
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