openoligo 0.1.7

An open-source platform for programmatically interacting with and managing Nucleic acid sequences synthesis processes.

OpenOligo

OpenOligo is an open-source platform for programmatically interacting with and managing DNA synthesis processes.

Getting Started

pip install openoligo

A simple Example

import asyncio

from openoligo.instrument import Instrument
from openoligo.protocols.dna_synthesis import synthesize
from openoligo.seq import Seq


inst = Instrument()

try:
    asyncio.run(synthesize(inst, Seq("ATCGAAATTTTT")))
except KeyboardInterrupt:
    print("Keyboard interrupt received, exiting...")

Firmware

The firmware for OpenOligo is composed of

• OpenOligo Library
• API server (part of OpenOligo Library)
• In a minimal linux image (OligoOS)