openslide-python

Python interface to OpenSlide

Project description

OpenSlide Python is a Python interface to the OpenSlide library.

OpenSlide is a C library that provides a simple interface for reading whole-slide images, also known as virtual slides, which are high-resolution images used in digital pathology. These images can occupy tens of gigabytes when uncompressed, and so cannot be easily read using standard tools or libraries, which are designed for images that can be comfortably uncompressed into RAM. Whole-slide images are typically multi-resolution; OpenSlide allows reading a small amount of image data at the resolution closest to a desired zoom level.

OpenSlide can read virtual slides in several formats:

Aperio (.svs, .tif)
Hamamatsu (.ndpi, .vms, .vmu)
Leica (.scn)
MIRAX (.mrxs)
Philips (.tiff)
Sakura (.svslide)
Trestle (.tif)
Ventana (.bif, .tif)
Generic tiled TIFF (.tif)

Requirements

Python 2 >= 2.6 or Python 3 >= 3.3
OpenSlide >= 3.4.0
Python Imaging Library or Pillow

Installation

Install OpenSlide.
pip install openslide-python

Using PIL

setup.py assumes that you want to use the Pillow fork of PIL. If you already have classic PIL installed, you can use it instead. Install OpenSlide Python with:

pip install --no-deps openslide-python

or, if you are installing by hand:

python setup.py install --single-version-externally-managed --record /dev/null

More Information

License

OpenSlide Python is released under the terms of the GNU Lesser General Public License, version 2.1.

Project details

Release history Release notifications | RSS feed

This version

1.1.2

Sep 14, 2020

1.1.1

Jun 12, 2016

1.1.0

Apr 20, 2015

1.0.1

Mar 10, 2014

1.0.0

Mar 9, 2014

0.5.1

Feb 16, 2014

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

openslide-python-1.1.2.tar.gz (316.6 kB view hashes)

Uploaded Sep 14, 2020 source

Built Distributions

openslide_python-1.1.2-cp310-cp310-win_amd64.whl (19.0 kB view hashes)

Uploaded Oct 10, 2021 cp310

openslide_python-1.1.2-cp310-cp310-win32.whl (18.5 kB view hashes)

Uploaded Oct 10, 2021 cp310

openslide_python-1.1.2-cp39-cp39-win_amd64.whl (18.8 kB view hashes)

Uploaded Nov 3, 2020 cp39

openslide_python-1.1.2-cp39-cp39-win32.whl (18.4 kB view hashes)

Uploaded Nov 3, 2020 cp39

openslide_python-1.1.2-cp38-cp38-win_amd64.whl (19.0 kB view hashes)

Uploaded Sep 14, 2020 cp38

openslide_python-1.1.2-cp38-cp38-win32.whl (18.4 kB view hashes)

Uploaded Sep 14, 2020 cp38

openslide_python-1.1.2-cp37-cp37m-win_amd64.whl (18.9 kB view hashes)

Uploaded Sep 14, 2020 cp37

openslide_python-1.1.2-cp37-cp37m-win32.whl (18.4 kB view hashes)

Uploaded Sep 14, 2020 cp37

openslide_python-1.1.2-cp36-cp36m-win_amd64.whl (18.9 kB view hashes)

Uploaded Sep 14, 2020 cp36

openslide_python-1.1.2-cp36-cp36m-win32.whl (18.4 kB view hashes)

Uploaded Sep 14, 2020 cp36

openslide_python-1.1.2-cp35-cp35m-win_amd64.whl (18.9 kB view hashes)

Uploaded Sep 14, 2020 cp35

openslide_python-1.1.2-cp35-cp35m-win32.whl (18.4 kB view hashes)

Uploaded Sep 14, 2020 cp35

openslide_python-1.1.2-cp34-cp34m-win_amd64.whl (16.8 kB view hashes)

Uploaded Sep 14, 2020 cp34

openslide_python-1.1.2-cp34-cp34m-win32.whl (17.0 kB view hashes)

Uploaded Sep 14, 2020 cp34

openslide_python-1.1.2-cp33-cp33m-win_amd64.whl (18.4 kB view hashes)

Uploaded Sep 14, 2020 cp33

openslide_python-1.1.2-cp33-cp33m-win32.whl (18.7 kB view hashes)

Uploaded Sep 14, 2020 cp33

openslide_python-1.1.2-cp27-cp27m-win_amd64.whl (16.8 kB view hashes)

Uploaded Sep 14, 2020 cp27

openslide_python-1.1.2-cp27-cp27m-win32.whl (17.1 kB view hashes)

Uploaded Sep 14, 2020 cp27

Hashes for openslide-python-1.1.2.tar.gz

Hashes for openslide-python-1.1.2.tar.gz
Algorithm	Hash digest
SHA256	`00f5e34dca56500b598454107a0acf243788ea2072b5468b3fea59f756b832a8`
MD5	`c2e142414ed445e97f9fa3c2fde9be73`
BLAKE2-256	`03da12dc0e7566ace61a5a65244220458dcb656b09cbf18ca50f3098875d97e4`

Hashes for openslide_python-1.1.2-cp310-cp310-win_amd64.whl

Hashes for openslide_python-1.1.2-cp310-cp310-win_amd64.whl
Algorithm	Hash digest
SHA256	`60993a23b8d0fd43e358bbe1595dcf539f5558bd310c376bae106690a8a0eaac`
MD5	`7843165675712cd9f14faa2e030a81a0`
BLAKE2-256	`927f2bd2e35db341d50f65ee9c733b400b0f6f6112d92cbe06d702c4267d4780`

Hashes for openslide_python-1.1.2-cp310-cp310-win32.whl

Hashes for openslide_python-1.1.2-cp310-cp310-win32.whl
Algorithm	Hash digest
SHA256	`709bbd5a4835424cea870ac8753753263bfab907a3149c343f43d05fbf7c6061`
MD5	`f0c21e4dabd0c435ab05cb6cc50cb860`
BLAKE2-256	`9fefd326b1bd90a7086545fb24381573345d78f46c05dda0706a0aa87fb9f293`

Hashes for openslide_python-1.1.2-cp39-cp39-win_amd64.whl

Hashes for openslide_python-1.1.2-cp39-cp39-win_amd64.whl
Algorithm	Hash digest
SHA256	`4bf148454b30ced98664c3c3c664190b6b5b373a15eeff0e8043fe1fb41cde54`
MD5	`b76177446bd8caafc4b180673cc86fcd`
BLAKE2-256	`7b5f2b52a279fcdf6dc7f77ff63d652535b63285b921fb9e18514990f77a9b8d`

Hashes for openslide_python-1.1.2-cp39-cp39-win32.whl

Hashes for openslide_python-1.1.2-cp39-cp39-win32.whl
Algorithm	Hash digest
SHA256	`c16d53451f877ff65de73f40e27ca44d7d8e9fb1e5f739d54143e5243e7ebc75`
MD5	`16ef651113aa6eadc36ed623ce539772`
BLAKE2-256	`451512bf0999311f4c1d6b62784a95a2ace1c2c57ab5dbbebad1567e94d760e1`

Hashes for openslide_python-1.1.2-cp38-cp38-win_amd64.whl

Hashes for openslide_python-1.1.2-cp38-cp38-win_amd64.whl
Algorithm	Hash digest
SHA256	`5dcd98f781bc7a75009a06c09d1c9508fc90259db48ac7bcb1a446a9f57ef731`
MD5	`da2af7d3843406933b5c1caab31c636d`
BLAKE2-256	`85a0211ae0004e50318aa8575ec29b47d92b56517dfcbc979de6be7c72e8e43e`

Hashes for openslide_python-1.1.2-cp38-cp38-win32.whl

Hashes for openslide_python-1.1.2-cp38-cp38-win32.whl
Algorithm	Hash digest
SHA256	`581067fa547e2e4bf1f81267f190d98311203fe6c84916a69f800a3974152b4f`
MD5	`8afe341623afab1039f76f4066216ad7`
BLAKE2-256	`da834c78e8eecc3e2293bccde57fa1dca2b78d05c9ee016f0a6c464903b16471`

Hashes for openslide_python-1.1.2-cp37-cp37m-win_amd64.whl

Hashes for openslide_python-1.1.2-cp37-cp37m-win_amd64.whl
Algorithm	Hash digest
SHA256	`268699fd111d274c57c88f42ee29861e126439b73360de9235a6adb5e58f5e80`
MD5	`62a7a5f25158fe139fda2df303cee49e`
BLAKE2-256	`70b9c1cab218cea3902d8876ad73d453efbe69f0000df2ad78fb7cb609673694`

Hashes for openslide_python-1.1.2-cp37-cp37m-win32.whl

Hashes for openslide_python-1.1.2-cp37-cp37m-win32.whl
Algorithm	Hash digest
SHA256	`a0f57f2ac78f7fbbfd04309f1bf9d61e116471bacb7bb9b637316e811f7b0068`
MD5	`1daf8d7c3543a07529fdb4c04f4e4aac`
BLAKE2-256	`6279b958f6636779597020e62f6a5adba83559888d16c742cd238c0a424e4130`

Hashes for openslide_python-1.1.2-cp36-cp36m-win_amd64.whl

Hashes for openslide_python-1.1.2-cp36-cp36m-win_amd64.whl
Algorithm	Hash digest
SHA256	`293837890e35ae6f0c3780a69c4d17fa3bc4fbc0ed6779c4e2cc532e8b4b1d47`
MD5	`e896a43debcf8a022cb5cd8d7ab80338`
BLAKE2-256	`37648f3c87cc4b011907c426ee076f423bccd2746bc389ac0535997ebba356c0`

Hashes for openslide_python-1.1.2-cp36-cp36m-win32.whl

Hashes for openslide_python-1.1.2-cp36-cp36m-win32.whl
Algorithm	Hash digest
SHA256	`8d11c2629151bafab0737dfa6b96b6c86c674852bb48c2ec4a29f093e1895520`
MD5	`d63b1fbf7e6f3c14a636bf9cdfcbff2a`
BLAKE2-256	`968799666b3962ed95d91793d45c0a0c4caf760114269b466e6817657f83c8aa`

Hashes for openslide_python-1.1.2-cp35-cp35m-win_amd64.whl

Hashes for openslide_python-1.1.2-cp35-cp35m-win_amd64.whl
Algorithm	Hash digest
SHA256	`eb7dfaa1cd2d45712944bd295c758523ca52917ae2f76d129209e5e73adf3287`
MD5	`ab5a7eb00428978e5b3e472cabfaba0d`
BLAKE2-256	`f73bc25f098ac7d407ba10962dfeed8e26c43290e387de19b5db371ce06c0507`

Hashes for openslide_python-1.1.2-cp35-cp35m-win32.whl

Hashes for openslide_python-1.1.2-cp35-cp35m-win32.whl
Algorithm	Hash digest
SHA256	`303cbcd204f3445bad86f4d967c131c2dcb30d86d6224cc0e0e5c89a44ca31ee`
MD5	`2e702eed868fac8cd058ae7dd308b4f2`
BLAKE2-256	`4381ae67ea6da7d1040b02314bdb6c3101afea8467fcffe678f592200afd30b9`

Hashes for openslide_python-1.1.2-cp34-cp34m-win_amd64.whl

Hashes for openslide_python-1.1.2-cp34-cp34m-win_amd64.whl
Algorithm	Hash digest
SHA256	`04f6a185335861c8d372c1c31ae57455c554321f0923d9bb30b02265d52a2675`
MD5	`b377feceaa123ef93fc63134a933d7c0`
BLAKE2-256	`a5e50946d030e8839c0d353924cc297a4dd2da2bd1d506f4463390c1c372ae5b`

Hashes for openslide_python-1.1.2-cp34-cp34m-win32.whl

Hashes for openslide_python-1.1.2-cp34-cp34m-win32.whl
Algorithm	Hash digest
SHA256	`9eb95e1f217c0deeaf20540048461e68f549462a67ebb017ed822d8f39f14a52`
MD5	`d09b2e2fd97ed7e811599ba970f67dfd`
BLAKE2-256	`9daa7c007ed05c070b7e41196f60c7fdef20494090efcdfddb59a5dd903ed660`

Hashes for openslide_python-1.1.2-cp33-cp33m-win_amd64.whl

Hashes for openslide_python-1.1.2-cp33-cp33m-win_amd64.whl
Algorithm	Hash digest
SHA256	`b5b6e35f2264b20b0cb2ec73506bfad3f7eaa811d8e4f03bb8824b3954f88a38`
MD5	`32b504ef7c60fbe8e7ead3b4f04a30b7`
BLAKE2-256	`10c8854a9d06330df1b878d57a77d144529a1190ad51d971cc756e65ebf7450b`

Hashes for openslide_python-1.1.2-cp33-cp33m-win32.whl

Hashes for openslide_python-1.1.2-cp33-cp33m-win32.whl
Algorithm	Hash digest
SHA256	`4d4e618eca48a2b3baa748fbb37c820e8ca326de368a13f4537dc923cd7c9983`
MD5	`662613869069fd3288c26a6d3c8f5026`
BLAKE2-256	`f679752f7959e086dd26a4ffe758998b9b714602f8ba15b81ab226f5e363ea8c`

Hashes for openslide_python-1.1.2-cp27-cp27m-win_amd64.whl

Hashes for openslide_python-1.1.2-cp27-cp27m-win_amd64.whl
Algorithm	Hash digest
SHA256	`af671a07c60746180c2b6809d13b0d38f5418824f9c06cd26372aa394816c87f`
MD5	`9dccc33525b33b486b76911eb3a8dbe0`
BLAKE2-256	`dee62499454f81fc7c7d5fb106a8b5fa1202f06f9db7058daf9535db5bf4b3aa`

Hashes for openslide_python-1.1.2-cp27-cp27m-win32.whl

Hashes for openslide_python-1.1.2-cp27-cp27m-win32.whl
Algorithm	Hash digest
SHA256	`6a614ba40bd6eb1588adf86c90f59d4e4243e14903572015656135313956d557`
MD5	`7b071d42207c82968c7f08a28f80c087`
BLAKE2-256	`dbef0ce70eb1b73b75b390a707c2039bcf2de188824be8eb7de2567da1814086`