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OpenSXRaw

CI crates.io PyPI docs.rs License: Apache-2.0 Rust MSRV

Part of the OpenMassSpec stack for mass spectrometry raw-file access.

Rust and Python reader for SCIEX .wiff/.wiff.scan legacy mass spectrometry data files, with no SCIEX SDK or software dependency. Covers the TripleTOF and QTRAP instrument families.

Documentation: sigilweaver.app/opensxraw/docs

Install

Prefer openmassspec-io with the sciex feature unless you need this parser standalone (minimal dependencies, or building your own abstraction) - the umbrella gives you format auto-detection, mzML conversion, and Arrow streaming across all wired-in vendors for free:

cargo add openmassspec-io --features sciex
pip install openmassspec[sciex]

Standalone:

Rust:

cargo add opensxraw

Python:

pip install opensxraw

Quickstart

Rust:

use opensxraw::reader::Reader;
use openmassspec_core::SpectrumSource;

let mut reader = Reader::open("sample.wiff")?;
for spectrum in reader.iter_spectra() {
    println!("{}: {} peaks", spectrum.native_id, spectrum.mz.len());
}

Python:

import opensxraw

reader = opensxraw.RawReader("sample.wiff")
spectrum = reader.read_spectrum(0)
print(spectrum.ms_level, spectrum.retention_time_sec, len(spectrum.mz))

Reader::open (and RawReader) expects the paired .wiff.scan file to sit alongside the .wiff file, with .scan appended to the .wiff filename.

See the docs site for the full guide, format specification, and API reference.

License

Apache-2.0. See LICENSE.

The format specification was developed by binary analysis of public mass-spectrometry datasets (PRIDE accessions). See CORPUS.md and ATTRIBUTION.md.

Metadata

Release files for opensxraw 0.3.0

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for opensxraw 0.3.0
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Built distributions (wheels)

Table of built distributions (wheels) for opensxraw 0.3.0
File
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opensxraw-0.3.0-pp311-pypy311_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl PyPy 3.11 PyPy 3.11 7.3 Linux glibc 2.17+ ARM64 Details
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opensxraw-0.3.0-cp315-cp315-manylinux_2_17_x86_64.manylinux2014_x86_64.whl CPython 3.15 CPython 3.15 Linux glibc 2.17+ x86-64 Details
opensxraw-0.3.0-cp314-cp314t-manylinux_2_17_x86_64.manylinux2014_x86_64.whl CPython 3.14 CPython 3.14 free-threading Linux glibc 2.17+ x86-64 Details
opensxraw-0.3.0-cp314-cp314t-manylinux_2_17_aarch64.manylinux2014_aarch64.whl CPython 3.14 CPython 3.14 free-threading Linux glibc 2.17+ ARM64 Details
opensxraw-0.3.0-cp314-cp314-win_amd64.whl CPython 3.14 CPython 3.14 Windows x86-64 Details
opensxraw-0.3.0-cp314-cp314-manylinux_2_17_x86_64.manylinux2014_x86_64.whl CPython 3.14 CPython 3.14 Linux glibc 2.17+ x86-64 Details
opensxraw-0.3.0-cp314-cp314-manylinux_2_17_aarch64.manylinux2014_aarch64.whl CPython 3.14 CPython 3.14 Linux glibc 2.17+ ARM64 Details
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opensxraw-0.3.0-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl CPython 3.13 CPython 3.13 Linux glibc 2.17+ ARM64 Details
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opensxraw-0.3.0-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl CPython 3.12 CPython 3.12 Linux glibc 2.17+ ARM64 Details
opensxraw-0.3.0-cp312-cp312-macosx_11_0_arm64.whl CPython 3.12 CPython 3.12 macOS 11.0+ ARM64 Details
opensxraw-0.3.0-cp312-cp312-macosx_10_12_x86_64.whl CPython 3.12 CPython 3.12 macOS 10.12+ x86-64 Details
opensxraw-0.3.0-cp311-cp311-win_amd64.whl CPython 3.11 CPython 3.11 Windows x86-64 Details
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opensxraw-0.3.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl CPython 3.11 CPython 3.11 Linux glibc 2.17+ ARM64 Details
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opensxraw-0.3.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl CPython 3.10 CPython 3.10 Linux glibc 2.17+ ARM64 Details
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opensxraw-0.3.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl CPython 3.9 CPython 3.9 Linux glibc 2.17+ ARM64 Details
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Release history Release notifications | RSS feed

0.4.0

33 release files

This release

0.3.0 This release

33 release files

0.2.5

33 release files

0.2.4

33 release files

0.2.3

33 release files

0.2.2

33 release files

0.2.1

33 release files

0.2.0

33 release files

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