openwholeslide
Wrapper around tifffile library to have the same API as OpenSlide.
Installation
$ pip install openwholeslide
Usage
- Similarly to OpenSlide, the openwholeslide package allows to load a WSI as follows:
import openwholeslide as ows
wsi = ows.WholeSlide(path="/path/to/wsi")
- Regions can be extracted from this WholeSlide object. For example, a lower resolution of the full scale WSI can be extracted as follows:
region = wsi.read_full(magnification=1.0)
- This actually performs a lazy loading which does not load the data information. In order to get access to the region's pixels (as an numpy.ndarray), the following property should be called:
img = region.as_ndarray
Contributing
Interested in contributing? Check out the contributing guidelines. Please note that this project is released with a Code of Conduct. By contributing to this project, you agree to abide by its terms.
License
openwholeslide was created by Arthur Elskens and Adrien Foucart. It is licensed under the terms of the MIT license.
Release files for openwholeslide 0.3.9
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
|---|---|---|---|---|
| openwholeslide-0.3.9.tar.gz | 15.7 kB | Without provenance | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| openwholeslide-0.3.9-py2.py3-none-any.whl | Python 3, Python 2 | none | any | Details |
Total release size: 29.9 kB
Release files / openwholeslide-0.3.9.tar.gz
| Download URL | openwholeslide-0.3.9.tar.gz |
|---|---|
| Size | 15.7 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/5.1.1 CPython/3.10.12
|
Release files / openwholeslide-0.3.9-py2.py3-none-any.whl
| Download URL | openwholeslide-0.3.9-py2.py3-none-any.whl |
|---|---|
| Size | 14.3 kB |
| Tags | Python 2 Python 3 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/5.1.1 CPython/3.10.12
|
Security for openwholeslide 0.3.9
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