opera-utils 0.25.4

Miscellaneous utilities for working with OPERA data products

opera-utils

Install

The opera_utils package is available on PyPI and conda-forge:

# if mamba is not already installed: conda install -n base mamba
mamba install -c conda-forge opera-utils

(Note: using mamba is recommended for conda-forge packages, but miniconda can also be used.)

pip install opera-utils

The pip dependency list for the base package is smaller; the optional depencies may be added with

pip install opera-utils[geopandas] # for just geopandas data frame support
pip install opera-utils[disp] # For remote access to DISP files
pip install opera-utils[all]  # all optional dependencies

DISP-S1 Usage examples

Try it out!

We have set up Github Actions so that users can download and format subsets of DISP-S1 data with no coding required!

1. Fork this repository
2. Set up your EARTHDATA_USERNAME and EARTHDATA_PASSWORD in the Github Actions secrets settings (e.g. for my fork, I use https://github.com/scottstanie/opera-utils/settings/secrets/actions )
3. Under the Actions tab, click on the disp_download_reformat workflow.
4. Select the Run workflow dropdown and supply the required information, then click the green Run workflow button
5. The resulting reformatted Zarr will be preserved as Github Artifacts, which can be downloaded.

You can also run the notebooks in the docs/notebooks directory:

• Jupyter Notebook
• Open in Colab

Usage examples

Parsing Sentinel-1 Burst IDs

import opera_utils
print(opera_utils.get_burst_id("OPERA_L2_CSLC-S1_T087-185683-IW2_20230322T161649Z_20240504T185235Z_S1A_VV_v1.1.h5"))
't087_185683_iw2'

Get DISP-S1 Frame metadata

In [4]: opera_utils.get_frame_to_burst_mapping(11114)
Out[4]:
{'epsg': 32610,
 'is_land': True,
 'is_north_america': True,
 'xmin': 546450,
 'ymin': 4204110,
 'xmax': 833790,
 'ymax': 4409070,
 'burst_ids': ['t042_088905_iw1',
  ...
 ]

To just get the burst IDs for a Frame:

In [3]: opera_utils.get_burst_ids_for_frame(11114)
Out[3]:
['t042_088905_iw1',
 't042_088905_iw2',
 ...
 't042_088913_iw2',
 't042_088913_iw3']

DISP-S1 access

Download a subset from the command lind

opera-utils disp-s1-download \
    --bbox -102.71 31.35 -102.6 31.45 \
    --frame-id 20697 \
    --output-dir subsets-west-texas \
    --end-datetime 2018-01-01 \\
    --num-workers 4

Search for products and create a stack

from opera_utils.disp import search, reader, DispProductStack

# Search for DISP-S1 products on CMR
products = search.get_products(frame_id=9154)

# Create the product stack for parsing frame metadata
stack = DispProductStack(products)

Setup for Developers

To contribute to the development of opera-utils, you can fork the repository and install the package in development mode. We encourage new features to be developed on a new branch of your fork, and then submitted as a pull request to the main repository.

To install locally,

1. Download source code:

git clone https://github.com/opera-adt/opera-utils.git && cd opera-utils

2. Install dependencies:

mamba env create --name my-opera-env --file environment.yml

3. Install the source in editable mode:

mamba activate my-opera-env
python -m pip install -e ".[all]"

We use pre-commit to automatically run linting and formatting:

# Get pre-commit hooks so that linting/formatting is done automatically
pre-commit install

This will set up the linters and formatters to run on any staged files before you commit them.

After making functional changes, you can rerun the existing tests and any new ones you have added using:

pytest