A toolbox for analyzing optical mapping and fluorescence imaging data.

These details have not been verified by PyPI

Project links

Homepage

GitHub Statistics

View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

Project description

optimap

Python toolbox for analyzing optical mapping data

optimap is an open-source Python toolbox for exploring, visualizing, and analyzing high-speed fluorescence imaging data with a focus on cardiac optical mapping data. It includes modules for data input/output, processing scientific video recordings, visualization, motion compensation, trace extraction, and analysis.

⚠️ optimap is currently in early development, expect breaking changes and bugs.

Installation

Installing pre-built binaries (Mac OSX, Windows, Linux)

pip install opticalmapping[all]

will install optimap and all recommended dependencies (including OpenCV and PySide2). If you wish to install your own version of OpenCV (e.g. for CUDA support) or Qt implementation use

pip install opticalmapping

instead. See Installing Optimap for more information.

Getting Started

See the Getting Started guide for installation instructions and a quick introduction to optimap. See the Tutorials for more detailed examples.

License

optimap is licensed under the MIT License.

Project details

These details have not been verified by PyPI

Project links

Homepage

GitHub Statistics

View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

Release history Release notifications | RSS feed

0.2.2

May 6, 2024

0.2.0

Feb 21, 2024

0.1.4

Oct 27, 2023

0.1.3

Oct 19, 2023

0.1.2

Sep 20, 2023

0.1.1

Sep 12, 2023

This version

0.1.0

Sep 12, 2023

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

opticalmapping-0.1.0.tar.gz (39.6 kB view hashes)

Uploaded Sep 12, 2023 Source

Built Distributions

opticalmapping-0.1.0-cp311-cp311-win_amd64.whl (123.8 kB view hashes)

Uploaded Sep 12, 2023 CPython 3.11 Windows x86-64

opticalmapping-0.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (240.1 kB view hashes)

Uploaded Sep 12, 2023 CPython 3.11 manylinux: glibc 2.17+ x86-64

opticalmapping-0.1.0-cp311-cp311-macosx_10_9_x86_64.whl (133.3 kB view hashes)

Uploaded Sep 12, 2023 CPython 3.11 macOS 10.9+ x86-64

opticalmapping-0.1.0-cp311-cp311-macosx_10_9_universal2.whl (216.1 kB view hashes)

Uploaded Sep 12, 2023 CPython 3.11 macOS 10.9+ universal2 (ARM64, x86-64)

opticalmapping-0.1.0-cp310-cp310-win_amd64.whl (123.2 kB view hashes)

Uploaded Sep 12, 2023 CPython 3.10 Windows x86-64

opticalmapping-0.1.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (238.6 kB view hashes)

Uploaded Sep 12, 2023 CPython 3.10 manylinux: glibc 2.17+ x86-64

opticalmapping-0.1.0-cp310-cp310-macosx_10_9_x86_64.whl (132.0 kB view hashes)

Uploaded Sep 12, 2023 CPython 3.10 macOS 10.9+ x86-64

opticalmapping-0.1.0-cp310-cp310-macosx_10_9_universal2.whl (213.3 kB view hashes)

Uploaded Sep 12, 2023 CPython 3.10 macOS 10.9+ universal2 (ARM64, x86-64)

opticalmapping-0.1.0-cp39-cp39-win_amd64.whl (123.1 kB view hashes)

Uploaded Sep 12, 2023 CPython 3.9 Windows x86-64

opticalmapping-0.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (238.4 kB view hashes)

Uploaded Sep 12, 2023 CPython 3.9 manylinux: glibc 2.17+ x86-64

opticalmapping-0.1.0-cp39-cp39-macosx_10_9_x86_64.whl (132.1 kB view hashes)

Uploaded Sep 12, 2023 CPython 3.9 macOS 10.9+ x86-64

opticalmapping-0.1.0-cp39-cp39-macosx_10_9_universal2.whl (213.6 kB view hashes)

Uploaded Sep 12, 2023 CPython 3.9 macOS 10.9+ universal2 (ARM64, x86-64)

opticalmapping-0.1.0-cp38-cp38-win_amd64.whl (123.3 kB view hashes)

Uploaded Sep 12, 2023 CPython 3.8 Windows x86-64

opticalmapping-0.1.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (238.1 kB view hashes)

Uploaded Sep 12, 2023 CPython 3.8 manylinux: glibc 2.17+ x86-64

opticalmapping-0.1.0-cp38-cp38-macosx_10_9_x86_64.whl (131.9 kB view hashes)

Uploaded Sep 12, 2023 CPython 3.8 macOS 10.9+ x86-64

opticalmapping-0.1.0-cp38-cp38-macosx_10_9_universal2.whl (213.2 kB view hashes)

Uploaded Sep 12, 2023 CPython 3.8 macOS 10.9+ universal2 (ARM64, x86-64)

Hashes for opticalmapping-0.1.0.tar.gz

Hashes for opticalmapping-0.1.0.tar.gz
Algorithm	Hash digest
SHA256	`9a0487c2da08695ef76d5a6670f756e72a72175d6ab9eee78c4c9859c16bf4ca`
MD5	`0a902ba854fd96bc6174319f51b403b4`
BLAKE2b-256	`807ce5351ac601dcaa959ac40a1782d3f65d5461c52f97089bc221937351b9af`

Hashes for opticalmapping-0.1.0-cp311-cp311-win_amd64.whl

Hashes for opticalmapping-0.1.0-cp311-cp311-win_amd64.whl
Algorithm	Hash digest
SHA256	`09a093f3414bd4e7dcd4e7830aade83b33b1cc682d156de5e310815750b9e351`
MD5	`034fc512146cf68b942906ac5d5fc4d2`
BLAKE2b-256	`f69ff904d3e508f8dff655e471fdf0e8a3f15a4a8b2702e4b328165d3aa98088`

Hashes for opticalmapping-0.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Hashes for opticalmapping-0.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm	Hash digest
SHA256	`97d475ad95f4721471beb0f4c26e923919ed550915acb1d39cc09e493e0d04c3`
MD5	`cfcd48be1ad44ee9f9df87e80b884332`
BLAKE2b-256	`b7b68abe6e2129a423071c181bf3d705211d67de096bb16b0e7c2595cda37cf3`

Hashes for opticalmapping-0.1.0-cp311-cp311-macosx_10_9_x86_64.whl

Hashes for opticalmapping-0.1.0-cp311-cp311-macosx_10_9_x86_64.whl
Algorithm	Hash digest
SHA256	`e22041d8c47b5f7aa74e6c357a6c19ae44a980a8f59427129dce37bf294241f3`
MD5	`ffb96d43bd4b674bc0150a555d01ecea`
BLAKE2b-256	`3090efe625ef3a5378bed09663255a93668887992b3640d361555064238b6a1e`

Hashes for opticalmapping-0.1.0-cp311-cp311-macosx_10_9_universal2.whl

Hashes for opticalmapping-0.1.0-cp311-cp311-macosx_10_9_universal2.whl
Algorithm	Hash digest
SHA256	`d0475b42d6c5ee91589a1a7268c5ca11e0d6affc043948ae59350e2a6485bc2c`
MD5	`924171c1af056e05b0f9fafeb7ec7fdc`
BLAKE2b-256	`f1cd3a0bd61814df2b5546b8c22017796d79084bd59aa518ca6986189906595d`

Hashes for opticalmapping-0.1.0-cp310-cp310-win_amd64.whl

Hashes for opticalmapping-0.1.0-cp310-cp310-win_amd64.whl
Algorithm	Hash digest
SHA256	`25bc5620dd94a41db80c2d3bc73726e7fac92003953b570543b67f13c0105c45`
MD5	`05cbc189776fe289a8d0948516915d50`
BLAKE2b-256	`5f31c837c45617695ddd8990c5cb15719614b8b14ea83e0a9e7bf365268635d5`

Hashes for opticalmapping-0.1.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Hashes for opticalmapping-0.1.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm	Hash digest
SHA256	`5f59da7cbd715a09ceeeb608671d81bd59351f3228ce4544e60695ac9f0b97fb`
MD5	`dbb197d2b3a3a1e32820296ebe3a0e3d`
BLAKE2b-256	`af536b4d2eb99c9be187f6edb5c0bad4a1c3983fcfd41778ea02a92c53810a9a`

Hashes for opticalmapping-0.1.0-cp310-cp310-macosx_10_9_x86_64.whl

Hashes for opticalmapping-0.1.0-cp310-cp310-macosx_10_9_x86_64.whl
Algorithm	Hash digest
SHA256	`881f6a913c1ce1b11b99623a68caf99dbb1865e38d1e105b7a82467a03263cae`
MD5	`34bfae9a227b9545d40c3d4bf5d92da7`
BLAKE2b-256	`09e1a9443094c30b5cf0957ad6621cd223d7ff2f35d674fef3850ac64dd95d4a`

Hashes for opticalmapping-0.1.0-cp310-cp310-macosx_10_9_universal2.whl

Hashes for opticalmapping-0.1.0-cp310-cp310-macosx_10_9_universal2.whl
Algorithm	Hash digest
SHA256	`b3df7bd02df83a26b97291b0b5938e43a3185cea7586b8e74123305c142737f8`
MD5	`b577823dbcd7079a03f020d5e084ac73`
BLAKE2b-256	`5f8933d167a8474831eafd4ac19be46891281721b126047b0563d61e93a560ff`

Hashes for opticalmapping-0.1.0-cp39-cp39-win_amd64.whl

Hashes for opticalmapping-0.1.0-cp39-cp39-win_amd64.whl
Algorithm	Hash digest
SHA256	`788f049fceed6996ff646ca570a7097d26392c5baf7449b4d2b5916b70452b54`
MD5	`b80273ad9a9541624dd9e30d25010ddc`
BLAKE2b-256	`ff70ba47203eed43cfed7453c84a3a18ac55f51c9471a7a0febe2ac6db62837f`

Hashes for opticalmapping-0.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Hashes for opticalmapping-0.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm	Hash digest
SHA256	`2e45d9680869dde163d966bc2dad44e3f4b3e9f082e0eec3a3cb9574ebf0f11f`
MD5	`ced6553140dde5975ef853bb1996732a`
BLAKE2b-256	`5ff9e5a199d8ef6f0fd7b70c8be9a5ec64f61a17f29839f8f52461275dba1745`

Hashes for opticalmapping-0.1.0-cp39-cp39-macosx_10_9_x86_64.whl

Hashes for opticalmapping-0.1.0-cp39-cp39-macosx_10_9_x86_64.whl
Algorithm	Hash digest
SHA256	`e55c2160f42b7485b7d7e7b935c92d89b40fb7b0cd6ab63f346d356e901f2f7d`
MD5	`fce7853662944ec5191941726ad98502`
BLAKE2b-256	`cddd7ebec9f1c62797e37fca71b87458182ba8b4d3ce7a22fa57040faf1e22f1`

Hashes for opticalmapping-0.1.0-cp39-cp39-macosx_10_9_universal2.whl

Hashes for opticalmapping-0.1.0-cp39-cp39-macosx_10_9_universal2.whl
Algorithm	Hash digest
SHA256	`0d34e7aba2848530cba6248648b51befa1a20ca23f82778332430efd7e384cf2`
MD5	`1d7b3cc7f77cafb3990e293c3bdfac5e`
BLAKE2b-256	`18f9dc06a7cb3ea2ddd682ad3c4de447f256e34e1b37a529ebddfadba6b78b71`

Hashes for opticalmapping-0.1.0-cp38-cp38-win_amd64.whl

Hashes for opticalmapping-0.1.0-cp38-cp38-win_amd64.whl
Algorithm	Hash digest
SHA256	`42451e55bff0d78f94210f63a9ca3a44680d31399e9362b8a37a91f913b8a01f`
MD5	`47722d0c8b54de11c906c80263e1da33`
BLAKE2b-256	`0c85fe27a93bcd96ec7a4f66f7cb8acb33c9ea6f37b0c3120ff7e13aeec7f652`

Hashes for opticalmapping-0.1.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Hashes for opticalmapping-0.1.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm	Hash digest
SHA256	`aef7ac580acddece9e51c4113eb180f747e0c9a77a4b7709539467eca61d6137`
MD5	`02106e761d9d4021a5ff4eaa86cb6cec`
BLAKE2b-256	`1f9e33bba731f0f74f41bb2a38636b4c090e81d2cdbe488052d061728a7d5efb`

Hashes for opticalmapping-0.1.0-cp38-cp38-macosx_10_9_x86_64.whl

Hashes for opticalmapping-0.1.0-cp38-cp38-macosx_10_9_x86_64.whl
Algorithm	Hash digest
SHA256	`4e877e9bbff12d593041b8635fe3041bee84ab6e442c0ab5a4612f5dedb8526e`
MD5	`c9cc1ae4ecae87d7e85e83fa431eb65d`
BLAKE2b-256	`7daa1fbfe2959fd7c31fa1154d08813b45ea17ea3d10f96e414a2fde8e229d3b`

Hashes for opticalmapping-0.1.0-cp38-cp38-macosx_10_9_universal2.whl

Hashes for opticalmapping-0.1.0-cp38-cp38-macosx_10_9_universal2.whl
Algorithm	Hash digest
SHA256	`cd0a806b0fd2785ccf6f2ba19dfa19c9cea87196300a56858b0aed46e29a689d`
MD5	`d840124b6a514b6602e99a3289f08406`
BLAKE2b-256	`b552e6d1821826a1091cc08ae968c6c8f11b5da5ddb87c7d169f7181a365ac0d`