optimModels - strain optimization
Project description
optimModels
The Python framework under development will allow the strain design of single and microbial community cultures. The main focus is to provide support for different modeling approaches.
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Simulation: allows to simulate different kinetic metabolic models considering different phenotypes. For the kinetic models simulation, we use the Odespy framework, which offers a unified interface to a large collection of software for solving systems of ordinary differential equations (ODEs).
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Optimization: perform the optimization using evolutionary computation. The inspyred framework is used for creating biologically-inspired computational intelligence algorithms in Python, including evolutionary computation.
Documentation
For documentation and API please check: http://optimModels.readthedocs.io/
Instalation
pip install optimModels
Credits and License
Developed at:
- Centre of Biological Engineering, University of Minho (2017)
Released under an Apache License.
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