Transfer feature annotations from a reference genome to a de novo assembled one.
Project description
orfmatch
Transfer feature annotations from a reference genome to a de novo assembled one.
Installation
Install from github:
pip install git+https://github.com/mcgilmore/orfmatch.git
Usage
orfmatch [-v (Optional: outputs sequence variants as fasta and alignments)] --input <assembly.fasta> --reference <reference.gbff> --output <output.gbff>
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file orfmatch-0.1.0.tar.gz.
File metadata
- Download URL: orfmatch-0.1.0.tar.gz
- Upload date:
- Size: 8.8 MB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.1.0 CPython/3.13.1
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
7d7db1dc3811451053f6a87ea7cbdded0ce9d324dbb9b1a3286c25c7926d9be2
|
|
| MD5 |
7ed13b39dada6a6fe3746bba1fb6c8d9
|
|
| BLAKE2b-256 |
67c0edffcf3a64f6e03d1be6ab1bee3c521e44e32af49c628bc39d6bb7652e66
|
File details
Details for the file orfmatch-0.1.0-py3-none-any.whl.
File metadata
- Download URL: orfmatch-0.1.0-py3-none-any.whl
- Upload date:
- Size: 17.8 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.1.0 CPython/3.13.1
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
7f533501254a21971c9c7c8a1e342b579df6beb4a772e32e3955d07b8487755e
|
|
| MD5 |
9d93310d643fdccef1f61d0162ceb3a2
|
|
| BLAKE2b-256 |
518741e01f33edd88e82cfe428fd5d1a0a1092344d7492704d51ab1ba82523d7
|
