Orients fa/fq/sam/bam file: reverse revcomp by finding polyA tails
Project description
A simple tool to help with orienting fa/fq/sam/bam RNAseq files. If your data contains polyA tails but some reads are in reverse complement (i.e., starting with polyT instead of ending with polyA), this script will reverse complement those reads and will print statistics of processed reads to stdout
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file orientseq-0.1.2.tar.gz.
File metadata
- Download URL: orientseq-0.1.2.tar.gz
- Upload date:
- Size: 2.3 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: poetry/1.8.3 CPython/3.12.1 Linux/6.1.0-23-amd64
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
8bb27ed6ad44a58a0c795f823b4cfcc8931e20cb7a13255f0c2b072dd4b4c363
|
|
| MD5 |
f4a3734d239d7c6e217fa84e64d496f6
|
|
| BLAKE2b-256 |
a4d14d6f83a1783ae3d5b6f818014f58a86d1fb269d5b4139a220831c95cce0a
|
File details
Details for the file orientseq-0.1.2-py3-none-any.whl.
File metadata
- Download URL: orientseq-0.1.2-py3-none-any.whl
- Upload date:
- Size: 3.0 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: poetry/1.8.3 CPython/3.12.1 Linux/6.1.0-23-amd64
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
e27fcfce09670ab4aa92301835649eaaa9e56d6fe9740a2f733e379b445c17ef
|
|
| MD5 |
ec7096ff5907bea0f74b2a0b45abc57f
|
|
| BLAKE2b-256 |
7d84423435c90ddbde47ace0ce7b6faa8f93aa65b2abc3dd8698e125366c048a
|
