OSE Plugin: Annotation Sheets

OntoSpreadEd plugin for generating annotation sheet templates during ontology releases.

Description

This plugin adds a release step that generates multi-sheet Excel workbooks for annotating research papers using ontology terms. Each sheet contains a hierarchical view of an ontology module with configurable annotation columns (e.g., "Entity present", "Evidence") grouped by arms (e.g., "Intervention", "Comparator").

Installation

pip install ose-plugin-annotation-sheets

Requirements

  • Python 3.12+
  • ose-core

Usage

Add the ANNOTATION_SHEETS step to your release_script.json:

{
  "name": "ANNOTATION_SHEETS",
  "args": {
    "included_files": ["module_a", "module_b"],
    "title": "My Ontology data extraction template",
    "arms": ["Intervention", "Comparator"],
    "annotation_columns": ["Entity present", "Evidence"]
  }
}

License

LGPL-3.0-or-later

Key dates

PyPI data
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  • Released:
Latest release

1 maintainer

PyPI data
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Avatar for b-gehrke from gravatar.com b-gehrke

Requires

Python >=3.12

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