osirispy 0.0.13

A small package to read OSIRIS HDF5 Data in python

OSIRISPY

osirispy is a python package for reading simulation output for the particle-in-cell code OSIRIS. It utilizes the numpy interface to provide a simple way to readsimulation output.

Installing osirispy

osirispy is available on PyPI. You can install it by running the following command inside your terminal

pip install osirispy

pip3 install osirispy

Using osirispy

import the package in python

import osirispy as ospy

You can use the function ospy.read() to read osiris files. It will give a different output based on the type of file that is being opened.

grid files

Grid files are the output of vdf objects and can have between 1 and 3 dimensions. They can represent charge density, current, E.M. fields, phasespaces, etc...

ospy.read("/path/to/grid.h5") will output a grid object when reading a grid-type file. The data is a numpy array accessible at grid.data The object also contains a list of axis containing the physical dimentions of the grid file at grid.axis.

particle (aka RAW) files

Particle files contain the output of the RAW diagnostic for a given species at a given time-step. RAW files contain information on the quantities x1,x2,x3,p1,p2,p3,ene. ospy.read(filepath,req_quantitites) will output a raw object with the required quantities specified with a list of strings on the req_quantities parameter.

The data is a python dictionary of numpy arrays accessible at grid data. An example is given below:

# read raw data
rawdata=ospy.read("/path/to/raw.h5",("x1","x2"))
#access x1 array
x1=rawdata.data["x1"]

The object also contains a dictionary with the label of each quantity accessible at raw.label.

track files

Track files contain the output of the tracks diagnostic for a given species . Track files contain information on the quantities t,x1,x2,x3,p1,p2,p3,ene. ospy.read(filepath,req_quantitites) will output a tracks object

The data is a python dictionary of a list of numpy arrays accessible at grid data. An example is given below:

# read tracks data
trackdata=ospy.read("/path/to/track.h5",("x1","x2"))
#access x1 array of particle i
x1=trackdata.data["x1"][i]

The object also contains a dictionary with the label of each quantity accessible at raw.label.