pace-util 0.9.0

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This package is a toolkit of Python objects and routines for writing weather and climate models.

This is research software and still in development. We welcome external contributions. If you would like to contribute to this project, please get in touch with one of our developers!

• Free software: BSD license

History

latest

v0.9.0

Minor changes: - Modified pace.util.Quantity.transpose to retain attributes, and loosened pace.util.ZarrMonitor.store requirements on attribute consistency, both to ease fv3net integration issues not addressed in v0.8.0

v0.8.0

Major changes: - Changed ZarrMonitor.store behavior to allow passing quantities with different dimension orders - Added CachingCommWriter which wraps a Comm object and can be serialized to a file-like object with a .dump method - Added CachingCommReader which can be loaded from the dump output of CachingCommWriter and replays its communication in the order it occurred. - NullComm is now public api in pace-util - Deleted deprecated finish_vector_halo_update method from CubedSphereCommunicator - Renamed DummyComm to LocalComm, and added support for message tags. The DummyComm symbol is still in place for backwards compatibility, but points to LocalComm - added error in CubedSphereCommunicator init if given a communicator with a size not equal to the total ranks of the given partitioner - subtile_extent method of Partitioner classes now takes in a required rank argument - TilePartitioner has a new edge_interior_ratio argument which defaults to 1.0, and lets the user specify the relative 1-dimensional extent of the compute domains of ranks on tile edges and corners relative to ranks on the tile interior. In all cases, the closest valid value will be used, which enables some previously invalid configurations (e.g. C128 on a 3 by 3 layout will use the closest valid edge_interior_ratio to 1.0)

Minor changes: - The split_cartesian_into_storages method is moved out of pace-util, as it is more generally used, and now lives in pace.dsl.gt4py_utils - created DriverGridData.new_from_grid_variables class method to initialize from grid variable data - updated QuantityFactory to accept the more generic GridSizer class on initialization - added sizer as public attribute on QuantityFactory - added Namelist class to initialize namelist files used in fv3gfs-fortran - added CubedSphereCommunicator.from_layout constructor method - added support for built-in datetime in ZarrMonitor - edge_interior_ratio is now an optional argument of tile_extent_from_rank_metadata - added support for writing constant data (written once, does not change with time) in ZarrMonitor

v0.7.0

Major changes: - Renamed package from fv3gfs-util to pace-util - Added NullTimer to use for default Timer value, it is a disabled timer which cannot be enabled (raises NotImplementedError) - Added pace.util.grid, keeping symbols out of top level as they are still unstable - Added HaloUpdater and associated code, which compiles halo packing for more efficient halo updates - Added physical constants to pace.util.constants

Minor changes: - Added method set_extra_dim_lengths to QuantityFactory

Fixes: - Fixed bug where ZarrMonitor depended on dict .items() always returning items in the same order

Other changes may exist in this version, as we temporarily paused updating the history on each PR.

v0.6.0

Major changes: - Use cftime.datetime objects to represent datetimes instead of datetime.datetime objects. This results in times stored in a format compatible with the fortran model, and accurate internal representation of times with the calendar specified in the coupler_nml namelist. - Timer class is added, with methods start and stop, and properties clock (context manager), and times (dictionary of accumulated timing) - CubedSphereCommunicator instances now have a .timer attribute, which accumulates times for “pack”, “unpack”, “Isend”, and “Recv” during halo updates - make SubtileGridSizer.from_tile_params public API - New method CubedSphereCommunicator.synchronize_vector_interfaces which synchronizes edge values on interface variables which are duplicated between adjacent ranks - Added .sel method to corner views (e.g. quantity.view.northeast.sel(x=0, y=1)) to allow indexing these corner views with arbitrary dimension ordering. - Halo updates now use tagged send/recv operations, which prevents deadlocks in certain situations - Quantity.data is now guaranteed to be a numpy or cupy array matching its .np module, and will no longer be a gt4py Storage - Quantity accepts a gt4py_backend on initialize which is used to create its .storage if one was not used on initialize - parent MPI rank now referred to as “root” rank in variable names and documentation - Added TILE_DIM constant for tile dimension of global quantities - Added Partitioner base class implementing features necessary for scatter/gather - Moved scatter and gather from TileCommunicator to the Communicator base class, so its code can be re-used by the CubedSphereCommunicator - Implemented subtile_slice, global_extent, and subtile_extent routines on CubedSpherePartitioner necessary for scatter/gather in CubedSphereCommunicator - Renamed argument tile_extent and tile_dims to global_extent and global_dims in routines to refer generically to the tile in the case of tile scatter/gather or cube in the case of cube scatter/gather - Fixed a bug where initializing a Quantity with a numpy array and a gpu backend would give CPUStorage - raise TypeError if initializing a quantity with both a storage and a gt4py_backend argument - eagerly create storage object when initializing Quantity - make data type of quantity and storage reflect the gt4py_backend chosen, instead of being determined based on the data type being numpy/cupy

Fixes: - If only_names is provided to open_restart, it will return those fields and nothing more. Previously it would include “time” in the returned state even if it was not requested. - Fixed a bug where quantity.storage and quantity.data could be out of sync if the quantity was initialized using data and a gt4py backend string - Default slice for corner views when not given at all as an index (e.g. when providing one index to a 2D view) now gives the same result as providing an empty slice (:) - Fixed a bug where quantity.view could refer to a different array than quantity.data if the quantity was initialized using data and a gt4py backend string, and then quantity.storage was accessed

v0.5.1

• enable MPI tests on CircleCI

v0.5.0

Breaking changes: - send_buffer and recv_buffer are modified to take in a callable, which is more easily serialized than a numpy-like module (necessary because we serialize the arguments to re-use buffers), and allows custom specification of the initialization if zeros are needed instead of empty.

Major changes: - Added additional regional views to Quantity as attributes on Quantity.view, including northeast, northwest, southeast, southwest, and interior - Separated fv3util into its own repository and began tracking history separately from fv3gfs-python - Added getters and setters for additional dynamics quantities needed to call an alternative dynamical core - Added storage property to Quantity, implemented as short-term shortcut to .data until gt4py GDP-3 is implemented

Deprecations: - Quantity.values is deprecated

v0.4.3 (2020-05-15)

Last release of fv3util with history contained in fv3gfs-python.