Using Python to implement Needleman Wunsch and Smith Waterman algorithms
Project description
Using Python to implement Needleman Wunsch and Smith Waterman algorithms
Introduction
Install
$ pip install pairwiseAlignment
Help
Usage: pairwiseAlignment [OPTIONS]
Using Python to implement Needleman Wunsch and Smith Waterman algorithms
for pairwise sequence alignment
Options:
-1, --seq1 TEXT The first sequence.
-2, --seq2 TEXT The second sequence.
-m, --match FLOAT The match score.
-d, --mismatch FLOAT The mismatch penalty.
-g, --gap FLOAT The gap open penalty.
-e, --extension FLOAT The gap extension penalty.
-o, --output TEXT The output directory.
-G, --global Choose Global alignment.[Default]
-L, --local Choose Local alignment.
--help Show this message and exit.
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