pairwiseAlignment

Using Python to implement Needleman Wunsch and Smith Waterman algorithms

Introduction

Install

$ pip install pairwiseAlignment

Help

Usage: pairwiseAlignment [OPTIONS]  

  Using Python to implement Needleman Wunsch and Smith Waterman algorithms
  for pairwise sequence alignment

Options:
  -1, --seq1 TEXT        The first sequence.
  -2, --seq2 TEXT        The second sequence.
  -m, --match FLOAT      The match score.  [default: 1.0]
  -d, --mismatch FLOAT   The mismatch penalty.  [default: -1.0]
  -g, --gap FLOAT        The gap open penalty.  [default: -2.0]
  -e, --extension FLOAT  The gap extension penalty.  [default: -1.0]
  -o, --output TEXT      The output directory.  [default: output]
  -G, --global           Choose global alignment.[default]
  -L, --local            Choose local alignment.
  -n, --nosave           Do not save the alignment result.
  --help                 Show this message and exit

Metadata

Release files for pairwiseAlignment 0.2.3

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Source distribution (sdist)

Source distribution for pairwiseAlignment 0.2.3
File	Size	Uploaded	Provenance
pairwiseAlignment-0.2.3.tar.gz	8.0 kB	Oct 13, 2022	Without provenance	Details

Built distribution (wheel)

Table of built distributions (wheels) for pairwiseAlignment 0.2.3
File	Interpreter	ABI	Platform	Reset
pairwiseAlignment-0.2.3-py3-none-any.whl 8.9 kB Oct 13, 2022 Without provenance	Python 3	none	any	Details

Total release size: 16.9 kB

Release files / pairwiseAlignment-0.2.3.tar.gz

Download URL	pairwiseAlignment-0.2.3.tar.gz
Size	8.0 kB
Tags	Source
SHA-256 checksum How to use checksums	`20290f74bc48baa08ffe7b54fca1ccbf195aa688235eb9b693c1a8ae2a51a3bf`
BLAKE2b-256 checksum How to use checksums	`31b4016cecce17f4052f8dd3b61eb1f7babd08a324212b26bdb8a91130aa12f5`
Upload date	Oct 13, 2022
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/4.0.1 CPython/3.9.12`

Release files / pairwiseAlignment-0.2.3-py3-none-any.whl

Download URL	pairwiseAlignment-0.2.3-py3-none-any.whl
Size	8.9 kB
Tags	Python 3
SHA-256 checksum How to use checksums	`ac173f10cf59e78a70f8cfa2257135d0d4796ac313ecc69db5cf3324223c2f6d`
BLAKE2b-256 checksum How to use checksums	`1ea7e9f6005680dae0c21de9c508577d0e9b7448879d04e7a08de77e49b8407f`
Upload date	Oct 13, 2022
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/4.0.1 CPython/3.9.12`

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