Parameterisation of ODE models using the brenda database and AI tools
Project description
Parameteriser
Installation
Basic
If you just want to interface the brenda database, you can use uv
uv sync or uv sync --extra dev if you also want to install e.g. jupyter notebook.
Then choose the resulting virtual environment in .venv/bin/python
Full
This is currently broken due to a numpy 1 / 2 version mismatch
If you also want to enable experimental features, such as interfacing the deepmolecules package, use pixi.
pixi install
The choose the resulting virtual environment in .pixi/envs/default/bin/python
License
Documentation
The official documentation is hosted here on gitlab.
Issues and support
If you experience issues using the software please contact us through our issues page.
Contributing
All contributions, bug reports, bug fixes, documentation improvements, enhancements and ideas are welcome. See our contribution guide for more information.
Release history Release notifications | RSS feed
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