pargraph 0.9.6

Distributed graph computation library

Citi/pargraph

Efficient, lightweight and reliable distributed computation engine.

Pargraph is a lightweight parallel graph computation library for Python. At its core, Pargraph consists of two modules: a graph creation tool and an embedded graph scheduler. You can use either or both modules in your code.

Installation

Install Pargraph via pip

pip install pargraph

If you want to use GraphBLAS for better graph scheduling performance, you may install the optional graphblas extra:

pip install pargraph[graphblas]

Graph creation

Pargraph provides a simple graph creation tool that allows you to build task graphs by decorating Python functions.

There are two decorators:

• @delayed: Decorate a function to make it delayed. Cannot contain function calls decorated with @delayed or @graph.
• @graph: Decorate a function to make it a graph. May contain function calls decorated with @delayed or @graph.

Example

import numpy as np
from pargraph import graph, delayed


@delayed
def filter_array(array: np.ndarray, low: float, high: float) -> np.ndarray:
    return array[(array >= low) & (array <= high)]


@delayed
def sort_array(array: np.ndarray) -> np.ndarray:
    return np.sort(array)


@delayed
def reduce_arrays(*arrays: np.ndarray) -> np.ndarray:
    return np.concatenate(arrays)


@graph
def map_reduce_sort(array: np.ndarray, partition_count: int) -> np.ndarray:
    return reduce_arrays(
        *(
            sort_array(filter_array(array, i / partition_count, (i + 1) / partition_count))
            for i in range(partition_count)
        )
    )

The map_reduce_sort function behaves like a normal Python function if called with concrete arguments.

import numpy as np

map_reduce_sort(np.random.rand(20))

# [0.06253707 0.06795382 0.11492823 0.14512393 0.20183152 0.41109117
#  0.42613798 0.45156214 0.4714821  0.54000373 0.54902451 0.62671881
#  0.64402013 0.65147012 0.70903525 0.77846584 0.83861765 0.89170381
#  0.92492478 0.95370363]

Use the to_graph method to generate a graph representation of the function.

map_reduce_sort.to_graph(partition_count=4).to_dot().write_png("map_reduce_sort.png")

Moreover, you can compose graph functions with other graph functions to generate ever more complex graphs.

@graph
def map_reduce_sort_recursive(
    array: np.ndarray, partition_counts: List[int], _low: float = 0, _high: float = 1
) -> np.ndarray:
    if len(partition_counts) == 0:
        return sort_array(array)

    partition_count, *partition_counts = partition_counts

    sorted_partitions = []
    for i in range(partition_count):
        low = _low + (_high - _low) * (i / partition_count)
        high = _low + (_high - _low) * ((i + 1) / partition_count)
        sorted_partitions.append(map_reduce_sort_recursive(filter_array(array, low, high), partition_counts, low, high))

    return reduce_arrays(*sorted_partitions)

map_reduce_sort_recursive.to_graph(partition_counts=4).to_dot().write_png("map_reduce_sort_recursive.png")

Use the to_dict method to convert the generated graph to a dict graph.

import numpy as np
from distributed import Client

with Client() as client:
    client.get(map_reduce_sort.to_graph(partition_count=4).to_dict(array=np.random.rand(20)))[0]

# [0.06253707 0.06795382 0.11492823 0.14512393 0.20183152 0.41109117
#  0.42613798 0.45156214 0.4714821  0.54000373 0.54902451 0.62671881
#  0.64402013 0.65147012 0.70903525 0.77846584 0.83861765 0.89170381
#  0.92492478 0.95370363]

Graph scheduler

Pargraph brings graph parallelization to parallel backends that may not support it out of the box. Think of it as a mini graph scheduler that lives in your program/application and sends out tasks concurrently to a parallel backend of your choice.

It implements Dask's get API and supports the same task graph format used by Dask making it a drop-in Dask replacement for applications that don't need a fully-fledged graph scheduler.

If installed, graph scheduling is powered by GraphBLAS, a high-performance sparse matrix linear algebra library. It allows better scheduling performance for large and complex graphs (e.g. graphs with 100k+ nodes) compared to native Python implementations.

Usage

Initialize graph engine

from pargraph import GraphEngine

graph_engine = GraphEngine()

Choose a parallel backend

If you want to use a parallel backend other than the default local multiprocessing backend, you may initialize a different parallel backend and pass it into GraphEngine's constructor.

Example with a dask backend

from distributed import Client
from distributed.cfexecutor import ClientExecutor

dask_client = Client(...)
graph_engine = GraphEngine(ClientExecutor(dask_client))

You may also implement your own parallel backend by implementing the submit method.

Example with a custom backend

from concurrent.futures import Future


class CustomBackend:
    def __init__(self):
        pass

    def submit(self, fn, /, *args, **kwargs) -> Future:
        future = Future()
        future.set_result(fn(*args, **kwargs))
        return future


backend = CustomBackend()
graph_engine = GraphEngine(backend)

Compute graph

Build the task graph and compute a key of your choice:

def inc(i):
    return i + 1


def add(a, b):
    return a + b


graph = {
    "x": 1,
    "y": (inc, "x"),
    "z": (add, "y", 10)
}
graph_engine.get(graph, "z")  # 12

You may also compute multiple keys if you like:

graph_engine.get(graph, ["x", "y", "z"])  # [1, 2, 10]

Contributing

Your contributions are at the core of making this a true open source project. Any contributions you make are greatly appreciated.

We welcome you to:

• Fix typos or touch up documentation
• Share your opinions on existing issues
• Help expand and improve our library by opening a new issue

Please review our community contribution guidelines and functional contribution guidelines to get started 👍.

Code of Conduct

We are committed to making open source an enjoyable and respectful experience for our community. See CODE_OF_CONDUCT for more information.

License

This project is distributed under the Apache-2.0 License. See LICENSE for more information.

Contact

If you have a query or require support with this project, raise an issue. Otherwise, reach out to [e-mail].