Patinae: Modern molecular visualization in Rust with WebGPU rendering

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  • License: BSD License (BSD-3-Clause)
  • Author: Pavel Yakovlev
  • Tags patinae , molecular , visualization , chemistry , biology
  • Requires: Python >=3.8
  • Provides-Extra: dev , numpy , widget
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Project description

Patinae Python Bindings

Python bindings for the Rust/WebGPU molecular visualization workspace.

Installation

pip install patinae

Jupyter Widget

The package includes an anywidget-based widget for interactive visualization in notebooks. Works in JupyterLab, Jupyter Notebook, VS Code, and Google Colab.

pip install patinae[widget]

from patinae.widget import Viewer

view = Viewer()
view.show()
cmd = view.get_cmd()
cmd.fetch("1CRN")
cmd.show("cartoon")
cmd.color("green", "chain A")

Features:

  • Fire-and-forget commands — cmd.fetch(), cmd.show(), cmd.color(), etc.
  • Synchronous queries — request/response channel for commands that return data
  • Local file loading — load structures from the local filesystem into the browser viewer
  • Picking support — optional click-to-select atoms (Viewer(picking=True))
  • Configurable layout — width and height parameters with sensible defaults

License

BSD-3-Clause

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  • License: BSD License (BSD-3-Clause)
  • Author: Pavel Yakovlev
  • Tags patinae , molecular , visualization , chemistry , biology
  • Requires: Python >=3.8
  • Provides-Extra: dev , numpy , widget
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This version

0.4.1

0.4.0.post1

0.4.0

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