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Project description
Multiscale-actin
A Vivarium wrapper for ReaDDy actin models.
Installation
Install conda: https://docs.conda.io/en/latest/miniconda.html
(conda is currently required to install readdy.)
- Create a virtual environment with conda-specific dependencies:
conda env create -f environment.yml - Activate the environment:
conda activate multiscale-actin - Install with pip dependencies:
pip install multiscale_actin(or install in editable mode:pip install -e .)
Installation for Mac's with ARM Chips
- Create a virtual environment with conda-specific dependencies:
conda env create --platform osx-64 -f mac_env.yml - Activate the environment:
conda activate multiscale-actin - Run example:
python3 multiscale_actin/processes/create_readdy_pbif.py - Visualize result with: https://simularium.allencell.org/viewer
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Source Distribution
pb_multiscale_actin-1.2.3.tar.gz
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