pbs-builder 0.4.8

The workflow management system for scalable data analyses.

PBS-builder

A simplified version of workflow management system for scalable data analysis.

Change log

• Version 0.4.7: consistent behaviour in mu02 and mu04
• Version 0.4.6: add suport for escape character in variable names
• Version 0.4.5: add progress bar and verbose output options
• Version 0.4.4: add elapsed time for each job
• Version 0.4.3: add support for non-BIOLS machines
• Version 0.4.2: integrate pushover service
• Version 0.4.1: auto-switch to corresponding pbs_server for qbatch
• Version 0.4.0: merge qcancel into qbatch commands, change API
• Version 0.3.1: add allocated/total gpus in pestat output
• Version 0.3.0: include pestat in package data
• Version 0.2.0: move sample_sheet from header to job section, add group_sheet support.
• Version 0.1.0: first functional version.

Usage

pbs-builder include the following commands:

1. qbatchfor batch submission of TORQUE/SLURM jobs

2. pestat for monitoring cluster & nodes status

3. pushover for get noficiations from compute nodes

Please refer to our wiki for detailed instructions.

Installation

pbs-builder runs in python3.7+ with the tomli package installed, no other dependencies are required.

Install pbs-builder using the following command:

pip install pbs-builder