Object-oriented processing of Protein Databank (PDB) files
Project description
PDB Objects
Set of classes for object-oriented processing of records from PDB files
© 2019 George D. Watson, University of York https://georgewatson.me
Available under an MIT license. See the LICENSE file.
Supports the following record types:
ATOM
HETATM
TER
HELIX
SHEET
No other record types are currently implemented, but can be implemented upon request.
Exposes the following classes:
PDBRecord
(should not normally be used directly, except to implement another record type)Residue
Atom
(for ATOM and HETATM records)Helix
Sheet
Ter
Exposes the following public functions:
read_atom
read_helix
read_sheet
read_ter
read_record
read_pdb
See class, function, and method docstrings for more information.
Installation
Available on PyPI.
Use pip3 install pdb-objects
to install,
then put import pdb_objects
at the top of your script.
Alternatively, clone this repository.
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