pdb2af v0.0.20
pdb2af uses SIFTS (https://www.ebi.ac.uk/pdbe/docs/sifts/) to download protein structures from the AlphaFold Protein Structure Database that overlap with PDB structures.
Installation
pdb2af is installed using pip (https://packaging.python.org/en/latest/tutorials/installing-packages/).
pip install pdb2af
Running pdb2af
pdb2af reads in a text file with PDB IDs. You need to be connected to the internet.
pdb2af -i pdb_ids.txt
Options:
-i text file with list of PDB IDs
-u update the SIFTS mapping between PDB IDs and UniProt accession numbers
Help
Contact Nick Fowler (njfowler.com) for support, queries or suggestions.
1 maintainer
Metadata
1 maintainer
Release files for pdb2af 0.0.20
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| pdb2af-0.0.20.tar.gz | 15.6 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| pdb2af-0.0.20-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 31.6 kB
Release files / pdb2af-0.0.20.tar.gz
| Download URL | pdb2af-0.0.20.tar.gz |
|---|---|
| Size | 15.6 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
twine/4.0.0 CPython/3.9.5
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Release files / pdb2af-0.0.20-py3-none-any.whl
| Download URL | pdb2af-0.0.20-py3-none-any.whl |
|---|---|
| Size | 16.0 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.0 CPython/3.9.5
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