PDBFixer Wheel
This is clone of PDBFixer package released as wheel on to PyPI.
Install PDBFixeruse via PyPI using pdbfixer-wheel
pip install pdbfixer-wheel
PDBFixer
PDBFixer is an easy to use application for fixing problems in Protein Data Bank files in preparation for simulating them. It can automatically fix the following problems:
- Add missing heavy atoms.
- Add missing hydrogen atoms.
- Build missing loops.
- Convert non-standard residues to their standard equivalents.
- Select a single position for atoms with multiple alternate positions listed.
- Delete unwanted chains from the model.
- Delete unwanted heterogens.
- Build a water box for explicit solvent simulations.
See our manual
Installation
PDBFixer can be installed with conda or mamba.
conda install -c conda-forge pdbfixer
Alternatively you can install from source, as described in the manual.
Or install PDBFixer via PyPI using pdbfixer-wheel
pip install pdbfixer-wheel
1 maintainer
Metadata
1 maintainer
Release files for pdbfixer-wheel 1.12.4
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| pdbfixer_wheel-1.12.4.tar.gz | 659.4 kB | With provenance | Details for pdbfixer_wheel-1.12.4.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| pdbfixer_wheel-1.12.4-py3-none-any.whl | Python 3 | none | any | Details for pdbfixer_wheel-1.12.4-py3-none-any.whl |
Total release size: 1.3 MB
Release files / pdbfixer_wheel-1.12.4.tar.gz
| Download URL | pdbfixer_wheel-1.12.4.tar.gz |
|---|---|
| Size | 659.4 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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Transparency logRelease files / pdbfixer_wheel-1.12.4-py3-none-any.whl
| Download URL | pdbfixer_wheel-1.12.4-py3-none-any.whl |
|---|---|
| Size | 677.2 kB |
| Tags | Python 3 |
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SHA-256 checksum How to use checksums |
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Yes |
| Uploaded via |
twine/6.1.0 CPython/3.13.7
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Dec 9, 2025.
Transparency logSecurity for pdbfixer-wheel 1.12.4
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
Full provenance
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Attestation for pdbfixer_wheel-1.12.4.tar.gz
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Dec 9, 2025.
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