peclet-core 0.3.0

peclet.core — shared transport-core infrastructure: Lagrangian particle halo (MPI) + AMR octree

core

Shared infrastructure for the transport-phenomena simulation suite (see ../docs/ for the suite-wide architecture, conventions, style, interfaces and roadmap).

It provides the pieces every method code (flow, dem, voro, …) should share: a common MPI block domain decomposition, an efficient asynchronous ghost-layer exchange (CPU + portable Kokkos GPU), particle migration, dynamic load balancing, unified SDF geometry (peclet::core::geom), an AMR octree flow subsystem (peclet::core::amr), and nanobind Python bindings. Header-only C++20 (the device side, compiled through Kokkos, is also C++20; only the morton dependency pins C++17 — see ../docs/STYLE.md). Cut-cell IBM is not a standalone shared module: it currently lives inside the AMR flow solver (peclet::core::amr) and in flow.

What works today

• peclet::core::decomp::BlockDecomposer<Dim> — orthogonal recursive bisection of a global cell grid into rank-owned blocks; ownerOf() tree-walk; x-fastest global/local linear indexing.
• peclet::core::decomp::BlockIndexer<Dim> — local↔global indexing for a block with a ghost layer.
• peclet::core::halo::NbxEngine — nonblocking-consensus sparse exchange (Issend + Ibarrier), for dynamic patterns.
• peclet::core::halo::GridHaloTopology<Dim> (grid_halo_topology.hpp) — asynchronous ghost-layer exchange with topology separated from exchange and a field-agnostic pack/unpack interface. buildTopology() runs once; two interchangeable exchange engines give identical results:
  • exchangeNbx() / start()+wait() — NBX, supports compute/comm overlap.
  • exchangePersistent() — MPI_Neighbor_alltoallv on a cached distributed-graph communicator; fastest for the static neighbour pattern of a fixed grid.
• peclet::core::halo::GridFieldView<T> — wraps a contiguous local array as an exchangeable field.
• peclet::core::halo::GridHalo<T> (grid_halo.hpp) — portable GPU-resident ghost-layer exchange (Kokkos: CUDA / HIP / OpenMP). Built once from a host GridHaloTopology<Dim>::flatten(); pack / unpack / periodic self-copy run as Kokkos::parallel_for over the device peclet::core::View<T> field, so the full field never crosses the bus — only the compact halo buffers are host-staged for MPI by default, with an opt-in GPU-aware path (env PECLET_CORE_GPU_AWARE_MPI). Bit-for-bit identical to the CPU exchange.
• peclet::core::halo::ParticleMigrator<Dim> — Lagrangian particle migration to owning ranks (NBX), the dynamic counterpart to the Eulerian grid halo.
• peclet::core::halo::ParticleHaloTopology<Dim> (particle_halo_topology.hpp) — persistent Lagrangian ghost halo: forward (owner→ghost), reverse (ghost→owner, accumulate) and forwardPositions (periodic image shift). peclet::core::halo::ParticleHalo<Dim> (particle_halo.hpp) is its GPU-resident Kokkos driver (on-device gather/scatter, host-staged or GPU-aware MPI), consumed by dem's distributed step.
• peclet::core::halo::rebalanceByParticleCount(...) (particle_rebalance.hpp) — dynamic load balancing for the Lagrangian path: re-inits the decomposition in place with the weighted ORB (BlockDecomposer::init(numBlocks, globalSize, weights)) and migrates. The Eulerian/AMR counterpart is peclet::core::amr::DistributedOctree::rebalance.
• peclet::core::geom (sdf.hpp, grid_sdf.hpp, vti_io.hpp) — shared SDF solids: analytic primitives + trilinear GridSdf behind one Sdf concept, with VTI (.vti) read/write.
• peclet::core::amr (include/peclet/core/amr/) — block-local-Morton AMR octree flow subsystem: peclet::core::amr::AmrFlow (collocated projection Navier–Stokes), device + distributed multigrid (pcg.hpp, multigrid.hpp, velocity_mg.hpp, distributed_*.hpp), cut-cell IBM (cut_cell.hpp) and solution-adaptive refinement (adapt.hpp, indicators.hpp). See docs/amr_collocated_projection.md.
• Python bindings (python/tpx_mpi.cpp, python/tpx_amr.cpp) — nanobind modules over the shared zero-copy View↔ndarray bridge (include/peclet/core/python/ndarray_interop.hpp). peclet.core.mpi exposes the host Lagrangian halo / migration / rebalance; peclet.core.amr exposes the device AMR flow.

Validated end-to-end by distributed explicit heat-diffusion solvers (plain, and around an SDF solid obstacle) matching a serial reference cell-for-cell across ranks, and consumed by the validated flow and dem distributed solvers. 26 ctests pass (np 1–8 CPU, 1–4 GPU).

Build / test / benchmark

cmake -S . -B build -DCMAKE_BUILD_TYPE=Release
cmake --build build -j
ctest --test-dir build --output-on-failure          # 26 ctests: serial + MPI (np=1,2,4,8)

# halo microbenchmark: weak scaling, NBX vs persistent
mpirun -np 4 ./build/benchmarks/bench_halo 48 1 300  # cells/rank/axis, ghost, iters

Requires MPI (OpenMPI/MPICH) and a C++20 compiler. morton is picked up automatically if checked out as a sibling directory (enables PECLET_CORE_HAVE_MORTON).

Status

Complete and in production. The block decomposition, the async ghost-layer exchange (CPU + portable Kokkos GPU, host-staged and opt-in GPU-aware), particle migration, dynamic load balancing (weighted ORB + AMR/Lagrangian rebalancing), SDF geometry, the AMR octree flow subsystem (device + distributed multigrid, collocated projection), and the nanobind Python bindings are all shipped and tested (26 ctests, np 1–8 CPU / 1–4 GPU). flow (distributed cut-cell IBM Navier–Stokes) and dem (distributed XPBD with load rebalancing) are validated consumers. CUDA is retired; Kokkos (CUDA / HIP / OpenMP) is the canonical device path. Remaining work is at-scale multi-GPU tuning.