peds 1.3.2

Package for parsing pedigree files

peds: basic pedigree parsing

All this does is parse pedigree files and group individuals within families. Only performs minimal validation.

Install

pip install peds

Usage

from peds import open_ped

families = open_ped(PATH)

family = families[0]

# find affected family members
affected = [ x for x in family is x.is_affected()]

# find parents
for person in family:
    father = family.get_father(person)
    mother = family.get_mother(person)