Package for parsing pedigree files
Project description
peds: basic pedigree parsing
All this does is parse pedigree files and group individuals within families. Only performs minimal validation.
Install
pip install pedsUsage
from peds import open_ped
families = open_ped(PATH)
family = families[0]
# find affected family members
affected = [ x for x in family is x.is_affected()]
# find parents
for person in family:
father = family.get_father(person)
mother = family.get_mother(person)
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