Package for parsing pedigree files
peds: basic pedigree parsing
All this does is parse pedigree files and group individuals within families. Only performs minimal validation.
pip install peds
from peds import open_ped families = open_ped(PATH) family = families # find affected family members affected = [ x for x in family is x.is_affected()] # find parents for person in family: father = family.get_father(person) mother = family.get_mother(person)
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