Perfusion of tissue/cell culture systems with XCaliburD syringes.
Project description
perfuse
Perfusion of tissue/cell culture systems with XCaliburD syringes.
Disclaimer
With the first public release, 0.1.0, development of this package is considered complete and will
not undergo major changes moving forward. The software has been tested in our fluidics system and is
robust/stable enough for our use-case in an academic research setting.
Note that this release is for documentation purposes only; use at your own risk.
Installation
The perfuse package relies on a long-unmaintained dependency which is not listed in PyPI, to
interface with XCaliburD syringe pumps from Tecan, tecancavro. Therefore, attempting a direct
installation from PyPI will lead to failed dependency resolution.
Two workarounds exist:
- Clone this repository and install it locally with
uv; thepyproject.tomlincludes all sources. - If adding
perfuseas a project dependency viauv, manually declare the source for thetecancavropackage.
The recommended approach to install the perfuse CLI locally is running:
uv tool install perfuse --with git+https://github.com/benpruitt/tecancavro
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