Petrel Chicks
Module to analyze the growth of petrel chicks. It fits mass-vs-age models per season, estimates peak mass, and plots the fitted curves.
Usage
This module installs the petrel-chicks command line interface with the
following commands:
Plot all peak mass models
Fit and plot a mass-vs-age model for every season found in the data. The age at peak mass is marked as a point on each curve:
petrel-chicks plot-all-peak-mass-models \
--data-path data/raw/chicks.csv \
--output-path reports/figures/all_peak_mass_models.png
Options:
| Option | Description | Default |
|---|---|---|
--data-path |
Input file path | Required |
--font-name |
Font family for the figure | STIXGeneral |
--output-path |
Output file path | Required |
--age-at-peak-mass-label / --no-age-at-peak-mass-label |
Show age at peak mass label | False |
Plot peak mass model
Plot the measured mass of the chicks together with the fitted model for a given season:
petrel-chicks plot-peak-mass-model \
--data-path data/raw/chicks.csv \
--season 2019 \
--output-path reports/figures/peak_mass_model_2019.png
Options:
| Option | Description | Default |
|---|---|---|
--data-path |
Input file path | Required |
--season |
Season | Required |
--output-path |
Output file path | Required |
1 maintainer
Metadata
1 maintainer
Release files for petrel-chicks 0.7.4
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