Skip to main content

Utilities for working with PGS Catalog API and scoring files

Project description


This convenience package bundles every PGS Catalog application, including:

Application Description Link
pgscatalog-download Download scoring files from the PGS Catalog in specific genome builds README
pgscatalog-combine Combine multiple scoring files into a consistent structure README
pgscatalog-relabel Relabel values in a column based on values in a column in another file README
pgscatalog-match Match structured scoring file to variants in target genomes README
pgscatalog-matchmerge Merge variant match results, useful on larger datasets README
pgscatalog-aggregate Aggregate calculated PGS split across multiple files README
pgscatalog-ancestry-adjust Adjust calculated PGS in the context of genetic ancestry README

Please note v1.0.0 contains breaking changes: CLI applications have been renamed and the package has been significantly refactored.

See for more details.


$ pip install pgscatalog-utils


Documentation is available at

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

pgscatalog_utils-1.0.1.tar.gz (1.6 kB view hashes)

Uploaded Source

Built Distribution

pgscatalog_utils-1.0.1-py3-none-any.whl (1.9 kB view hashes)

Uploaded Python 3

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page