PhaSePred
Predict the phase-separation propensity of a protein from its amino-acid sequence. Implementation of Chen et al. 2022 PNAS.
Install
pip install phasepred
Requires Python >= 3.12.
Use
phasepred predict --fasta proteins.fasta --mode SaPS --output scores.csv
Four modes: SaPS and PdPS (any species, 8 features), hSaPS and hPdPS
(human, 10 features). The output CSV carries the score plus every feature value.
Input can also be UniProt accessions:
phasepred predict --ids "P35637,Q9Y2W1" --mode SaPS --output scores.csv
Feature tools
Five of the nine feature components ship with the package and work immediately. The rest need a one-time install:
phasepred check-tools
This prints a status row per component, and for every missing one the exact command that installs it.
More
Source, training data, retraining and AUC validation against the paper: https://github.com/notwhiteblank/PhaSePred
1 maintainer
Metadata
1 maintainer
Release files for phasepred 1.0.0
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Source distribution (sdist)
| File | Size | Uploaded | |
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| phasepred-1.0.0.tar.gz | 2.4 MB | Details |
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| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| phasepred-1.0.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 4.0 MB
Release files / phasepred-1.0.0.tar.gz
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| Size | 1.7 MB |
| Tags | Python 3 |
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