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🧬 PhyloData CLI

For Developers

🔧 Tech Stack

  • Python: Requires Python 3.13+
  • Streamlit: Web interface for data processing
  • UV: Modern Python package manager and installer (no venv required)
  • Just: Command runner used for development workflows

📋 Prerequisites

  • Python 3.13+
  • UV for dependency management
  • Just for running commands

🛠️ Development Commands

Run these commands with just:

just test    # Run pytest tests with UV
just check   # Run ruff linter with auto-fix
just format  # Format code with ruff

In order to run a script using the dependencies, just preface it with uv python:

uv python my_script.py

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