PhytKit
Plant physiology model fitting, written in Rust: photosynthesis (FvCB C3 and C4, empirical light response), stomatal conductance (BTA, Medlyn), xylem vulnerability, pressure–volume curves, soil water retention, and LI-600 porometer tools.
pip install phytkit
This installs the phytkit Python package and the pk command-line tool. Both return the same
JSON.
pk describe fvcb
pk fit photosynthesis leaf.csv --model fvcb
pk fit soil soil.csv --group-by sample --units kPa
pk li600 correct porometer.csv --sidedness 1.5
import phytkit as pk
pk.fit("photosynthesis", "leaf.csv", model="fvcb", fix=["gm"], max_iter=400) # same as `pk fit`
pk.fit_arrays("fvcb", {"Ci": ci, "Q": q, "T": t_kelvin}, a) # data in memory
pk.fit_many("fvcb", [(x1, y1), (x2, y2)], threads=8) # parallel batch
pk.predict("fvcb", {"Vcmax25": 90}, {"Ci": ci, "Q": q, "T": t_kelvin})
Failures raise phytkit.PhytKitError, with a stable .code and a .hint.
- Documentation: https://plantsimulationlab.github.io/PhytKit/
- Source and issues: https://github.com/PlantSimulationLab/PhytKit
MIT licensed.
1 maintainer
Metadata
1 maintainer
Release files for phytkit 0.1.0
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| phytkit-0.1.0.tar.gz | 259.8 kB | With provenance | Details for phytkit-0.1.0.tar.gz |
Built distributions (wheels)
| File | Actions Reset | |||
|---|---|---|---|---|
| phytkit-0.1.0-cp39-abi3-win_amd64.whl | CPython 3.9 | abi3 | Windows x86-64 | Details for phytkit-0.1.0-cp39-abi3-win_amd64.whl |
| phytkit-0.1.0-cp39-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.whl | CPython 3.9 | abi3 | Linux glibc 2.17+ x86-64 | Details for phytkit-0.1.0-cp39-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.whl |
| phytkit-0.1.0-cp39-abi3-manylinux2014_aarch64.manylinux_2_17_aarch64.whl | CPython 3.9 | abi3 | Linux glibc 2.17+ ARM64 | Details for phytkit-0.1.0-cp39-abi3-manylinux2014_aarch64.manylinux_2_17_aarch64.whl |
| phytkit-0.1.0-cp39-abi3-macosx_11_0_arm64.whl | CPython 3.9 | abi3 | macOS 11.0+ ARM64 | Details for phytkit-0.1.0-cp39-abi3-macosx_11_0_arm64.whl |
| phytkit-0.1.0-cp39-abi3-macosx_10_12_x86_64.whl | CPython 3.9 | abi3 | macOS 10.12+ x86-64 | Details for phytkit-0.1.0-cp39-abi3-macosx_10_12_x86_64.whl |
Total release size: 5.4 MB
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