picea
Sprucing up bioinformatics analysis
pip install picea
picea has datastructures and methods to perform common bioinformatics tasks. Currently sequences, sequence annotations, trees, and ontologies are supported.
Example:
from picea import Tree, treeplot
import matplotlib.pyplot as plt
newick = '(((a,b),(c,d)),e)'
tree = Tree.from_newick(newick)
fig, (ax1, ax2) = plt.subplots(ncols = 2, figsize = (10, 4))
#left-to-right layout with direct links
treeplot(tree, style='rectangular', ltr=True, ax=ax1)
#right-to-left layout with square links
treeplot(tree, style='square', ltr=False, ax=ax2)
1 maintainer
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
picea-0.0.31.tar.gz
(21.1 kB
view details)
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
picea-0.0.31-py3-none-any.whl
(21.9 kB
view details)
File details
Details for the file picea-0.0.31.tar.gz.
File metadata
- Download URL: picea-0.0.31.tar.gz
- Upload date:
- Size: 21.1 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via:
poetry/1.8.3 CPython/3.10.6 Darwin/23.3.0
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
57ca49e92ff2be839ed0ff23a7dfa154388a71ff909aa7b0bff4fac44eaf618b
|
|
| MD5 |
fd212ddbc39e3e4216cc9f596c3acf8e
|
|
| BLAKE2b-256 |
2353373ba796f49469d69e6d8e90815ebe2c883eae8b61bedbbf5b0b96c25a2a
|
File details
Details for the file picea-0.0.31-py3-none-any.whl.
File metadata
- Download URL: picea-0.0.31-py3-none-any.whl
- Upload date:
- Size: 21.9 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via:
poetry/1.8.3 CPython/3.10.6 Darwin/23.3.0
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
05b729e9d2b1fc10d47d463d27b06f7d01aaa588b604a12938a39b4df86897a6
|
|
| MD5 |
0e828613deeac2b3c8d4961e993bad3e
|
|
| BLAKE2b-256 |
b9f385ada3008e17efad45d40c064caf7831ec131bbdafcebd44ec6b5863b19f
|
