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A lightweight python library for working with trees and biological sequence collections

Project description


Lightweight python library for working with trees and sequence collections

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pip install picea

example figure

The above figure can be generated with the following code

from picea import Tree, treeplot
import matplotlib.pyplot as plt

newick = '(((a,b),(c,d)),e)'
tree = Tree.from_newick(newick)

fig, (ax1, ax2) = plt.subplots(ncols = 2, figsize = (10, 4))

#left-to-right layout with direct links
treeplot(tree, style='rectangular', ltr=True, ax=ax1)

#right-to-left layout with square links
treeplot(tree, style='square', ltr=False, ax=ax2)

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