picea
Sprucing up bioinformatics analysis
pip install picea
picea has datastructures and methods to perform common bioinformatics tasks. Currently sequences, sequence annotations, trees, and ontologies are supported.
Example:
from picea import Tree, treeplot
import matplotlib.pyplot as plt
newick = '(((a,b),(c,d)),e)'
tree = Tree.from_newick(newick)
fig, (ax1, ax2) = plt.subplots(ncols = 2, figsize = (10, 4))
#left-to-right layout with direct links
treeplot(tree, style='rectangular', ltr=True, ax=ax1)
#right-to-left layout with square links
treeplot(tree, style='square', ltr=False, ax=ax2)
1 maintainer
Metadata
1 maintainer
Release files for picea 0.0.31
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| picea-0.0.31.tar.gz | 21.1 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| picea-0.0.31-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 43.1 kB
Release files / picea-0.0.31.tar.gz
| Download URL | picea-0.0.31.tar.gz |
|---|---|
| Size | 21.1 kB |
| Tags | Source |
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Release files / picea-0.0.31-py3-none-any.whl
| Download URL | picea-0.0.31-py3-none-any.whl |
|---|---|
| Size | 21.9 kB |
| Tags | Python 3 |
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