Single Cell RNA Sequencing Marker Selection Package
PicturedRocks Single Cell Analysis Tool
PicturedRocks is a python package that implements information-theoretic feature selection algorithms.
To install the latest GitHub version of PicturedRocks, do an "editable" installation of PicturedRocks:
git clone firstname.lastname@example.org:umangv/picturedrocks.git cd picturedrocks pip install -e .
PicturedRocks in compatible with
scanpy and uses its
AnnData objects. Most methods require cluster labels to be loaded.
from picturedrocks.read import read_clusts, process_clusts adata = read_clusts(adata, "clust_labels.csv") adata = process_clusts(adata)
More detailed information can be found on the online documentation.
Pull requests are welcome. Please use numpy-style docstrings and format your code with black.
Copyright © 2017-2019 Umang Varma, Anna Gilbert
PicturedRocks is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
PicturedRocks is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with PicturedRocks. If not, see http://www.gnu.org/licenses/.
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