Convert pileup to SAM

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  • License: Apache Software License
  • Author: Warren W. Kretzschmar
  • Tags htslib, sam, bam, pileup, samtools
  • Requires: Python >=3.7, <4
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Project description

pileup2sam

A partial implementation of a pileup to SAM format conversion tool.

  • This is an inefficient and naive implementation, but it seems to do the trick.
  • Does not support indels!

Example usage

pileup2sam -r test/cases/simulated.fa test/cases/simulated.head100.pileup out.sam

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for wkretzsch from gravatar.com wkretzsch

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These details have not been verified by PyPI
Project links
Meta
  • License: Apache Software License
  • Author: Warren W. Kretzschmar
  • Tags htslib, sam, bam, pileup, samtools
  • Requires: Python >=3.7, <4
Classifiers

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This version

0.3.0

0.2.0

0.1.0

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