pileup2sam

A partial implementation of a pileup to SAM format conversion tool.

  • This is an inefficient and naive implementation, but it seems to do the trick.
  • Does not support indels!

Example usage

pileup2sam -r test/cases/simulated.fa test/cases/simulated.head100.pileup out.sam

Project links

Key dates

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  • Released:
Latest release

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for wkretzsch from gravatar.com wkretzsch

Credits

Author: Warren W. Kretzschmar

License

Apache Software License

Requires

Python >=3.7, <4

Tags

htslib sam bam pileup samtools

Classifiers

Report project as malware

Release files for pileup2sam 0.3.0

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Source distribution for pileup2sam 0.3.0
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