pinpy 0.0.2

PINIR database package

PINPy

PINPy is a Python package used for data processing for the development of a novel specialized database of Potato Type Inhibitor-II family PIs (Pin-II type PIs) plant protease inhibitors. The database, together with the web-based information system, is called PINIR (Pin-II type PIs Information Resource) and can be accessed using following web-link.

Database URL :https://pinir.ncl.res.in/

It consist of following modules:

1. domain_finder.py: This module provides a function which indentifies which Domains are found in a Sequence and what are their location i.e. it's start and end position.
2. domain_type.py: This module provides a function which based upon Linker organization in IRD's (Domains) identifies the Domain Type
3. dsbond_finder.py: This module provides a function which finds the probable Di-Sulphide Bonds in the available Domain sequences.
4. linker_finder.py: This module provides a function which finds which Linker is found in a Domain and what is its location i.e. it's start and end position.
5. rc_finder.py: This module provides a function which finds which RCL is found in a Domain and what is its location i.e. it's start and end position.
6. rcl_residues.py: This module provides a function which identifies the Residues at P1, P2 and P1` position in an RCL.
7. amino_composition.py: This module provides a function which finds the Amino Acids composition of Amino Acid Sequences. These Amino Acid sequences can be PI sequences or Domain sequences. It gives each Amino Acid's count and percentage in the sequences.