PixelPatrol Bio-Image Loader Extension (pixel-patrol-loader-bio)
This extension provides four loaders for multi-dimensional life-science imaging formats.
Loaders
bioio - BioIO (CZI, LIF, ND2, TIFF, rasters)
Uses the BioIO library for broad format support.
.czi- Zeiss CZI.lif- Leica LIF.nd2- Nikon ND2.tif,.tiff,.ome.tif- TIFF via BioIO.jpg,.jpeg,.png,.bmp- common raster formats.zarr,.ome.zarr- zarr stores via BioIO
tifffile - TiffFile (TIFF / OME-TIFF)
Direct TIFF loading via tifffile with lazy Zarr-backed access.
.tif,.tiff,.ome.tif- including multi-series OME-TIFF- Lighter than
bioiofor TIFF-only datasets
zarr - Zarr (zarr / OME-Zarr)
Native zarr store loading with OME-NGFF axis support.
.zarr,.ome.zarr
h5 - HDF5 (HDF5 / BigDataViewer / Imaris)
Container loader: each dataset in the file becomes its own image.
.h5,.hdf5- including BigDataViewer (BDV).ims- Imaris
Installation
uv pip install pixel-patrol-loader-bio
Or as part of the full stack:
uv pip install pixel-patrol
Getting Started
Please see the pixel-patrol documentation for usage instructions.
https://pixelpatrol.app/docs/latest/
3 maintainers
Metadata
3 maintainers
Release files for pixel-patrol-loader-bio 1.0.1
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| File | Size | Uploaded | Provenance | |
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| pixel_patrol_loader_bio-1.0.1.tar.gz | 31.9 kB | Without provenance | Details |
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| pixel_patrol_loader_bio-1.0.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 51.5 kB
Release files / pixel_patrol_loader_bio-1.0.1.tar.gz
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| Size | 19.6 kB |
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