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Python bindings for performance critical parts of pixelator

Project description

pixelator_core_py

Python versions

Python bindings for pixelator-core, exposing Rust implementations of graph statistics and community detection algorithms for fast execution from Python.

Features

  • Compute graph-level statistics.
  • Run community detection with:
    • Fast Label Propagation (FLP)
    • Leiden
    • Hybrid FLP + Leiden flow (run_hybrid_community_detection)

NB: for the sake of memory efficiency, all these bindings read and write the data from and to parquet files.

Requirements

  • Python 3.10+
  • Rust toolchain (for building from source)
  • maturin (installed automatically when using uv)

CI currently builds wheels for Linux, macOS, and Windows across Python 3.10-3.13.

Installation

Option 1: Local development install (recommended in this repo)

cd packages/python_bindings
uv run maturin develop --release

This builds and installs pixelator_core_py into your active Python environment.

Option 2: Build a wheel and install it

cd packages/python_bindings
maturin build --release --out dist/
pip install dist/*.whl

Quickstart

from pixelator_core_py import (
    find_graph_statistics,
    run_label_propagation,
    run_leiden,
    run_hybrid_community_detection,
)

parquet_file = "./edgelist.parquet"

# 1) Inspect the graph
n_nodes, n_edges, n_components, frac_lcc = find_graph_statistics(parquet_file)
print(n_nodes, n_edges, n_components, frac_lcc)

# 2) Run hybrid graph workflow and write filtered edge list
(
    output_file,
    pre_recovery_stats,
    post_flp_stats,
    post_recovery_stats,
) = run_hybrid_community_detection(
    parquet_file=parquet_file,
    resolution=1.0,
    output="./filtered_edge_list.parquet",
    flp_epochs=1,
    randomness=0.1,
    seed=42,
    max_iteration=None,
    multiplet_recovery=True,
)
print("Filtered edge list written to:", output_file)
print("Pre recovery nodes:", pre_recovery_stats.node_count)

Input and Output

  • Input is expected to be an edge-list Parquet file compatible with pixelator-core.
  • run_label_propagation and run_leiden produce node-partition Parquet outputs.
  • run_hybrid_community_detection produces a filtered edge-list Parquet output.
  • Output paths are optional; defaults are used when omitted.

Logging

The module initializes Rust logging via pyo3-log when imported. Configure Python logging in your application to surface logs.

Troubleshooting

  • Build fails with compiler/toolchain errors:
    • Ensure Rust is installed and up to date (rustup update).
  • Bindings not updated after build
    • Reinstall in the active environment with uv run maturin develop --release.
    • Run uv sync --reinstall-package pixelator-core-py
  • Architecture mismatch (especially on macOS):
    • Ensure Python interpreter architecture matches your target wheel/build.

Development

From the repository root, general build commands are documented in the main README.md. For Python bindings specifically:

cd packages/python_bindings
uv run maturin develop --release

License

This package is part of the pixelator-core repository and follows the same license.

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Publisher: wheels.yml on PixelgenTechnologies/pixelator-core

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