An automated process for plant genome annotation
Project description
PlantAnno
An automated process for plant genome annotation
Install
Get license file (named gm_key_64.gz) for GeneMark(GeneMark-ES/ET/EP ver 4.69_lic) from here, and save this file in braker2_singularity.
cd singularity
bash busco_downloads.sh
wget https://github.com/Gaius-Augustus/Augustus/releases/download/v3.4.0/augustus-3.4.0.tar.gz
wget http://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.57-90.0/interproscan-5.57-90.0-64-bit.tar.gz
wget https://github.com/gatech-genemark/ProtHint/releases/download/v2.6.0/ProtHint-2.6.0.tar.gz
wget https://github.com/SouthernCD/genewise2_docker/raw/main/wise2.4.1.tar.gz
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PlantAnno-0.2.6.tar.gz
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PlantAnno-0.2.6-py3-none-any.whl
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