PlantAnno
An automated process for plant genome annotation
Install
Get license file (named gm_key_64.gz) for GeneMark(GeneMark-ES/ET/EP ver 4.69_lic) from here, and save this file in braker2_singularity.
cd singularity
bash busco_downloads.sh
wget https://github.com/Gaius-Augustus/Augustus/releases/download/v3.4.0/augustus-3.4.0.tar.gz
wget http://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.57-90.0/interproscan-5.57-90.0-64-bit.tar.gz
wget https://github.com/gatech-genemark/ProtHint/releases/download/v2.6.0/ProtHint-2.6.0.tar.gz
wget https://github.com/SouthernCD/genewise2_docker/raw/main/wise2.4.1.tar.gz
1 maintainer
Metadata
1 maintainer
Release files for PlantAnno 0.2.6
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
|---|---|---|---|---|
| PlantAnno-0.2.6.tar.gz | 17.3 kB | Without provenance | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| PlantAnno-0.2.6-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 36.3 kB
Release files / PlantAnno-0.2.6.tar.gz
| Download URL | PlantAnno-0.2.6.tar.gz |
|---|---|
| Size | 17.3 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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|
|
BLAKE2b-256 checksum How to use checksums |
c6e3d00c4887f6bd706f9b470c5556acdaa707f78dbd02c61523dd2aca8a9f74
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.0 CPython/3.7.3
|
Release files / PlantAnno-0.2.6-py3-none-any.whl
| Download URL | PlantAnno-0.2.6-py3-none-any.whl |
|---|---|
| Size | 19.1 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
e373b95d5007e02e8e46b0126779549d129eddda1f33ca84d8630d25089e1877
|
|
BLAKE2b-256 checksum How to use checksums |
8368c89f652d9b281da9361335682f67d63ad4642c43a5b649ee0d680a41fad1
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.0 CPython/3.7.3
|
Security for PlantAnno 0.2.6
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No provenance found
None of the files in this release were uploaded with provenance metadata.
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