25 projects
yxtree
Here's an example of a repository
yxseq
Xu Yuxing's personal tools for biology sequence analysis
yxutil
Xu Yuxing's personal python tools.
local-reassembly
Locally reassembling haplotypes from BAM files generated by WGS data.
yxmath
Xu Yuxing's personal math tools
local-reannotation
Here's an example of a repository
SNPfilter
A handy little tool for filtering SNPs.
yxquantgene
Xu Yuxing's personal quantitative genomic tools
yxcompgen
Xu Yuxing's personal comparative genomics tools
pyVMO
A test python toolkit for variant site analysis
mutchecker
Here's an example of a repository
HugeP2G
Aligning a large number of protein sequences to a genome (use genblasta and genewise)
taxontools
A toolkit for analyzing Taxonomy
yxalign
Here's an example of a repository
yxmap
Xu Yuxing's personal geographic data-processing tools
GeoGenoPlot
A python package for plotting correlations between variants and environmental factors.
biogeoloc
A python object package for storing and managing geographic information about biological samples.
yxsql
Xu Yuxing's personal sqlite orm.
ToolBiox
a biological toolkit for genome assembly, annotation and analysis that we have accumulated from our bioinformatics work
PlotBiox
Xu Yuxing's personal biology plot toolbox.
rRNAFinder
A python tool for identify rRNA gene in plant genome.
BioSeqTools
A small tool for analyzing biological sequences
BioResource
A tool for easy and fast access to biological big data
PlantAnno
An automated process for plant genome annotation
miRNABlast
Use mature query miRNA sequences to BLAST the genome, fold the flanking sequences of the subjects to find possible homologous miRNA locus
