21 projects
HugeP2G
Aligning a large number of protein sequences to a genome (use genblasta and genewise)
mutchecker
Here's an example of a repository
taxontools
A toolkit for analyzing Taxonomy
yxmath
Xu Yuxing's personal math tools
yxtree
Here's an example of a repository
yxalign
Here's an example of a repository
yxutil
Xu Yuxing's personal python tools.
yxseq
Xu Yuxing's personal tools for biology sequence analysis
yxmap
Xu Yuxing's personal geographic data-processing tools
GeoGenoPlot
A python package for plotting correlations between variants and environmental factors.
biogeoloc
A python object package for storing and managing geographic information about biological samples.
yxsql
Xu Yuxing's personal sqlite orm.
pyVMO
A test python toolkit for variant site analysis
ToolBiox
a biological toolkit for genome assembly, annotation and analysis that we have accumulated from our bioinformatics work
PlotBiox
Xu Yuxing's personal biology plot toolbox.
rRNAFinder
A python tool for identify rRNA gene in plant genome.
SNPfilter
A handy little tool for filtering SNPs.
BioSeqTools
A small tool for analyzing biological sequences
BioResource
A tool for easy and fast access to biological big data
PlantAnno
An automated process for plant genome annotation
miRNABlast
Use mature query miRNA sequences to BLAST the genome, fold the flanking sequences of the subjects to find possible homologous miRNA locus
