rRNAFinder

rRNAFinder is a Python tool designed to identify rRNA genes in the genome.

Installation

This package relies on NCBI BLAST and BLAT. Please ensure these are installed prior to installing rRNAFinder.

To install rRNAFinder using pip, use the following command:

pip install rRNAFinder

Usage

usage: rRNAFinder [-h] [-s {plants,animals,fungi,bacteria}] [-l LOG_FILE] [-o OUTPUT_DIR] fasta_file

Identify rRNA genes in the genome

positional arguments:
  fasta_file            a fasta file

optional arguments:
  -h, --help            show this help message and exit
  -s {plants,animals,fungi,bacteria}, --species {plants,animals,fungi,bacteria}
  -l LOG_FILE, --log_file LOG_FILE
                        path for log file (default: None)
  -o OUTPUT_DIR, --output_dir OUTPUT_DIR
                        output prefix (default: rRNA_finder)

Currently only plants genomes are supported

Metadata

Release files for rRNAFinder 0.0.3

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for rRNAFinder 0.0.3
File	Size	Uploaded	Provenance
rRNAFinder-0.0.3.tar.gz	10.4 kB	Nov 13, 2023	Without provenance	Details

Built distribution (wheel)

Table of built distributions (wheels) for rRNAFinder 0.0.3
File	Interpreter	ABI	Platform	Reset
rRNAFinder-0.0.3-py3-none-any.whl 14.1 kB Nov 13, 2023 Without provenance	Python 3	none	any	Details

Total release size: 24.4 kB

Release files / rRNAFinder-0.0.3.tar.gz

Download URL	rRNAFinder-0.0.3.tar.gz
Size	10.4 kB
Tags	Source
SHA-256 checksum How to use checksums	`80c1811dfac15762c5caefd4a80138c712353e146c202cbe11669651b6cf7c0b`
BLAKE2b-256 checksum How to use checksums	`86ae4baa529593563d7c71520d339db51f13552f4b387980be8e348db73152a3`
Upload date	Nov 13, 2023
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/4.0.2 CPython/3.9.13`

Release files / rRNAFinder-0.0.3-py3-none-any.whl

Download URL	rRNAFinder-0.0.3-py3-none-any.whl
Size	14.1 kB
Tags	Python 3
SHA-256 checksum How to use checksums	`6251f48850b8272db4bc4bb288646075cc9131bc22dcd9c9946e8c63a948f3dc`
BLAKE2b-256 checksum How to use checksums	`02724456ed021869e1bab45e6692a57a6674de1ae0f436dd22199b62e0f0a99a`
Upload date	Nov 13, 2023
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/4.0.2 CPython/3.9.13`

Security for rRNAFinder 0.0.3

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