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plotastrodata

Python package to make figures from radio astronomical data by astropy and matplotlib. The API, examples, and gallery are available in readthedocs. The PDF manual is available here.

Highlights

  • Read, write, and process astronomical FITS images, spectral cubes, position-velocity diagrams, and NumPy arrays, including WCS coordinates, spectral axes, beam information, and brightness-temperature conversion.
  • Create 2D maps, channel maps, position-velocity diagrams, RGB composites, line profiles, spatial slices, and interactive 3D isosurface visualizations.
  • Overlay color, contour, polarization-vector, and RGB data from different spatial grids, with astronomical coordinates, beams, scale bars, regions, markers, and other annotations.
  • Prepare data through trimming, interpolation, binning, masking, centering, rotation, deprojection, beam circularization, and profile extraction.
  • Estimate image noise, including support for primary-beam-corrected data.
  • Fit Gaussian models to line profiles and two-dimensional image components.
  • Use supporting tools for coordinate and line-of-sight transformations, centered Fourier transforms and visibility sampling, and Bayesian or grid-based parameter estimation.

Installation

Install from conda-forge:

conda install conda-forge::plotastrodata

or from PyPI:

pip install plotastrodata

To install the latest source from GitHub:

git clone https://github.com/yusukeaso-astron/plotastrodata
cd plotastrodata
python -m pip install .

To update a source installation, run the following commands in the cloned repository:

git pull
python -m pip install --upgrade .

Demo and Usage

The repository includes example.py, which demonstrates the main plotting and analysis features. After cloning the repository and installing the package, run:

python example.py

More examples and the complete API reference are available in the online documentation.

Requirement

  • Python >= 3.11
  • astropy >= 7.2
  • corner (only for fitting)
  • dynesty (only for fitting)
  • emcee >= 3.1.5 (only for fitting)
  • ffmpeg (only for movie)
  • matplotlib
  • numpy >= 2.0
  • pillow (only for RGB figures)
  • plotly (only for html cube)
  • ptemcee (only for fitting)
  • pydantic >= 2
  • scikit-image (only for html cube)
  • scipy
  • tqdm (only for fitting)

Conventions and Limitations

  • Array axes are ordered as (y, x) for a 2D image, (v, y, x) for a spectral cube, and (v, x) for a position-velocity diagram. With NumPy-array input, supply matching one-dimensional coordinate arrays; a spectral cube requires v to construct channel maps. FITS input obtains these coordinates from its header.
  • Spatial coordinates are offsets from center. They are expressed in arcseconds when dist=1. When dist is set to the source distance in parsecs, spatial offsets and beam sizes are expressed in au.
  • By default, the R.A. axis increases toward the left (xflip=True), following the usual astronomical image convention. Use xflip=False to reverse this behavior.
  • Velocity coordinates and vsys are in km/s, while restfreq is in Hz. A frequency axis read from FITS is converted to velocity relative to vsys.
  • Sky positions may be given as coordinate strings, such as 'ICRS 01h23m45.6s 01d23m45.6s'. Numeric positions supplied through poslist, such as [0.2, 0.3], are relative plotting positions: 0 is the left or bottom edge and 1 is the right or top edge. They are not spatial offsets.
  • Angles are in degrees unless an API explicitly states otherwise. Sky position angles are measured from north toward east. The polar-coordinate arrays theta and phi used by the line-of-sight utilities are in radians.
  • A beam is represented by [bmaj, bmin, bpa], where the first two values use the current spatial unit and bpa is in degrees. Tb=True converts data from Jy/beam to brightness temperature and requires a valid rest frequency and spatial-resolution metadata.
  • sigma may be a numeric RMS value, a string selecting a noise-estimation method, or None to disable noise-dependent behavior. See the API documentation for the available estimation methods.
  • Annotation methods accept a single value or a list of values. include_chan selects displayed channels by zero-based index; None applies the annotation to all channels.
  • Position-velocity mode (pv=True) does not support regions, lines, arrows, or segment maps because its spatial and velocity axes use different units. Markers and text may still be placed using relative plotting positions.
  • Constants in const_utils are plain numerical values in SI units, not astropy.units.Quantity objects.

Author

  • Name: Yusuke Aso
  • Affiliation: Korea Astronomy and Space Science Institute
  • E-mail: yaso@kasi.re.kr

License

"plotastrodata" is under GNU General Public License Version 3.

Metadata

Release files for plotastrodata 1.10.3

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