Portable toolkit for interacting with the PyMetaTome pipeline
Project description
pmtutils
PyMetaTome utilities. When working with the PyMetaTome pipeline, there is a need for portable helper tools that can easily be added to custom containers.
These utilities are currently targeted at key processes in PyMetaTome:
- Database creation and similarity matrix construction.
- YAML metadata file operations.
- Read sampling prior to bioinformatic analyses.
- Webhook handling.
pmtutils requires Samtools and ClustalW2 for database creation.
Python dependencies:
- Biopython
- ruamel_yaml
- NumPy
- flask
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