pobo 1.1.1

Python3 parser and network representation of Open Biological and Biomedical Ontologies (OBO)

Usage

from pobo import Parser

parser = Parser("file.obo")

parser.headers.get("format-version")
parser.headers.get("...")

for stanza in parser:
    stanza.name
    stanza.tags

    for tag, value in stanza.tags.items():
        ...

include modifiers

parser = Parser("file.obo", include_modifiers=True)

...

for tag, value in stanza.tags.items():
    value.value
    value.modifiers