populse_mia
Project description
Documentation
The documentation is available on populse_mia's website here
Installation
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From PyPI, for users
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By cloning the package, for developers
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From source, to use the latest version of populse_mia
Usage
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After an installation in user mode:
python3 -m populse_mia
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After an installation in developer mode, interprets the main.py file from the source code directory:
cd [populse_install_dir]/populse_mia/populse_mia python3 main.py
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Depending on the operating system used, it was observed some compatibility issues with PyQt5/SIP. In this case, we recommend, as a first attempt, to do:
python3 -m pip install --force-reinstall pyqt5==5.14.0 python3 -m pip install --force-reinstall PyQt5-sip==5.0.1
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A minimal data set (~500 MB, zip file with Bruker, Philips and NIfTI data) can be downloaded here to allow users to quickly start using and testing Mia.
Contributing to the project
If you'd like to contribute to the project please read our developer documentation page. Please also read through our code of conduct.
Tests
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Unit tests written thanks to the python module unittest
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Continuous integration made with Travis (Linux, OSX), and AppVeyor (Windows)
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Code coverage calculated by the python module codecov
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The module is ensured to work with Python >= 3.6
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The module is ensured to work on the platforms Linux, OSX and Windows
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The script of tests is populse_mia/test.py, so the following command launches the tests:
python3 populse_mia/test.py (from populse_mia root folder, for example [populse_install_dir]/populse_mia)
Requirements
- capsul >= 2.5.0, < 3.0.0
- cryptography
- matplotlib
- mia-processes >= 2.5.0, < 3.0.0
- nibabel
- nipype
- pillow
- populse-db >= 2.5.0, < 3.0.0
- pre-commit
- pyqt5
- python-dateutil
- pyyaml
- scikit-image
- scipy
- snakeviz
- soma-base >= 5.2.0, < 6.0.0
- soma-workflow >= 3.2.2
- six >= 1.13
- traits
Other packages used
- sphinx
- unittest
License
- The whole populse project is open source
- Populse_mia is precisely released under the CeCILL software license
- All license details can be found here, or refer to the license file here.
Support and Communication
All bugs, concerns and enhancement requests for populse_mia can be submitted here.
The developer team can even be contacted using populse-support@univ-grenoble-alpes.fr.
Project details
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