Python module for processing nanopore sequencing

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  • License: MIT License Copyright (c) [2025] [Xiuqi Chen] Permission is hereby granted, free of charge, to any...
  • Author: Xiuqi Chen
  • Tags nanopore , peptide , bioinformatics
  • Requires: Python >=3.11
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Project description

PoreFlow

Nanopore data analysis tools

pipeline status Latest Release

PoreFlow is a fast, simple, and flexible set of tools for analysing raw nanopore sequencing data, intended for use for research in the Cees Dekker lab (and beyond?).

Please see the Documentation for an introductory tutorial and full user guide.

Features

  • Python API for storing measurement, event, and step data.
  • Event detection algorithm
  • Fast step detection algorithm written in C++
  • Support for reasarch .fast5 files, along with .dat files from the UTube device
  • Filter events with basic metrics and store metadata
  • Find DNA-peptide boundary with expected DNA sequence

If you need help with PoreFlow, do not hesitate to get in contact:

  • For questions, contact the authors in-person or via email
  • To report a bug or make a feature request, open an Issue on GitLab.

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Contributing to PoreFlow

Please see the Contributing Guide for information on how you can help develop PoreFlow.

Authors

Thijn Hoekstra, Xiuqi Chen

License

MIT license

Project details

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  • License: MIT License Copyright (c) [2025] [Xiuqi Chen] Permission is hereby granted, free of charge, to any...
  • Author: Xiuqi Chen
  • Tags nanopore , peptide , bioinformatics
  • Requires: Python >=3.11
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