PoreFlow
Nanopore data analysis tools
PoreFlow is a fast, simple, and flexible set of tools for analysing raw nanopore sequencing data, intended for use for research in the Cees Dekker lab (and beyond?).
Please see the Documentation for an introductory tutorial and full user guide.
Features
- Python API for storing measurement, event, and step data.
- Event detection algorithm
- Fast step detection algorithm written in C++
- Support for reasarch .fast5 files, along with .dat files from the UTube device
- Filter events with basic metrics and store metadata
- Find DNA-peptide boundary with expected DNA sequence
If you need help with PoreFlow, do not hesitate to get in contact:
- For questions, contact the authors in-person or via email
- To report a bug or make a feature request, open an Issue on GitLab.
Links
Contributing to PoreFlow
Please see the Contributing Guide for information on how you can help develop PoreFlow.
Authors
Thijn Hoekstra, Xiuqi Chen
License
1 maintainer
Metadata
1 maintainer
Release files for poreflow 0.4.7
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| poreflow-0.4.7.tar.gz | 49.7 MB | Details |
Release files / poreflow-0.4.7.tar.gz
| Download URL | poreflow-0.4.7.tar.gz |
|---|---|
| Size | 49.7 MB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
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| Uploaded via |
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